Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0142
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)                    30   1.8  
SB_33098| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_38000| Best HMM Match : fn3 (HMM E-Value=0.0095)                    29   4.2  
SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)               29   5.5  
SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59)               28   7.3  
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_44233| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)           28   9.6  
SB_35963| Best HMM Match : Cadherin (HMM E-Value=0)                    28   9.6  
SB_34907| Best HMM Match : Cadherin (HMM E-Value=0)                    28   9.6  
SB_29931| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20)         28   9.6  

>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
          Length = 1243

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +2

Query: 407  LDSITCSHKVCTKIWRSIYLLKFVLNGF*EIISNEVLSGATFSQHEHVARMWAFRLYSK 583
            L +++CS K+C   W ++ L   +L+ F E +  E L+      H H+AR    RL  K
Sbjct: 1051 LRTMSCSDKICR--WNALGLQGALLSHFIEPVYLESLTLGYLYDHGHLARAVCCRLQHK 1107


>SB_33098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
 Frame = +2

Query: 374 KMTSVHPCRHFLDSITCSHKVCTKIWRSIYLLK-FVLNGF*EIISNEVLSGATFS--QHE 544
           +  S + C  +L+++          + S  LL+ F  NGF +II+    +  T    Q  
Sbjct: 19  RFLSKNSCHSYLENVALIIIYHYPYYDSFPLLRSFYENGFRKIIACGPKANETIGVLQVS 78

Query: 545 HVARMWAFRLYSKSTRMGPRYAHEKQLH 628
           H    W +    K+ R+ P Y    Q+H
Sbjct: 79  HDRGFWGYECIGKAARLHPGYEGYLQIH 106


>SB_38000| Best HMM Match : fn3 (HMM E-Value=0.0095)
          Length = 433

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
 Frame = +2

Query: 383 SVHPCRHFLDSITCSHKVCTKIWRSIYLL-KFVLNGF*EIISNEVLSGATFS--QHEHVA 553
           S H C  + D++          + S  LL  F  NGF +II    ++       Q  H  
Sbjct: 141 SNHDCYSYFDNVALIIVYHYPYYESFSLLHSFYENGFRKIIVCGPVANDKIEVMQVSHEK 200

Query: 554 RMWAFRLYSKSTRMGPRYAHEKQLH 628
             W +   +K+ R+ P Y    Q+H
Sbjct: 201 GYWGYECLAKAARLHPGYEGYLQIH 225


>SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)
          Length = 671

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 259 DVCYENR-PRTYTNTCPGQGLLHCLMYQMIENCPEESLRKDDV 384
           D+ + NR P  Y  +C G G+L    +  +  C + SL+KD +
Sbjct: 48  DISHNNRDPLEYHCSCAGIGVLANQHHLRVHKCRDVSLKKDAI 90


>SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59)
          Length = 351

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 98  GTPYLRKSRLCHQWSCINTKLGFPESLPPREQSAVVLSRILPDGAWR-NLTDHTWMCATR 274
           G  + RK+   H+W C+     +  SL   E       R L D  W  +L DH W+C+ R
Sbjct: 162 GAGHARKALRDHEWLCLLRDHEWLFSLRDHEWL-----RSLRDYEWLCSLRDHLWLCSLR 216


>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 206 LSRILPDGAWRNLTDHTWMCATRIGLVHTPT 298
           ++ +LP G W+NL D T   +T   L   PT
Sbjct: 20  ITEVLPVGTWQNLGDATGSPSTPAALYSNPT 50


>SB_44233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -2

Query: 472 FQQVNAPPNLRTYFVRTCN*IQKVTTRVNRRHLYADFLPDNSQSSDTSGSAADPVRDTCW 293
           +Q +  P ++  YF  TC    K  ++ N  + +  + PD   S+  SGSA +      W
Sbjct: 316 WQTLRQPLHIDPYFA-TCPFNAKQGSQYNENN-FGSYCPDGQMSTGFSGSATEESTTQWW 373

Query: 292 CMYEAY 275
               AY
Sbjct: 374 FGGNAY 379


>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 128 CHQWSCINTKLGFPESLPPREQSAVVLSRILPDGAWRNLTDHTWM 262
           CH+W C   K    E L P   S VVLSR++    +     H W+
Sbjct: 801 CHEWFC--HKWLSREVLSPVVLSRVVLSRVVVTSGFVTSGCHQWL 843


>SB_35963| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 864

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 745 GDPRFVI-STSGVCTSGRRTTFYGNPILGV-DVVATAT 638
           G+  F I STSGV T   +  + GNP   V D+V TAT
Sbjct: 408 GNNNFAIDSTSGVVTLQTQLEYKGNPAQDVIDLVVTAT 445


>SB_34907| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 697

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 745 GDPRFVI-STSGVCTSGRRTTFYGNPILGV-DVVATAT 638
           G+  F I STSGV T   +  + GNP   V D+V TAT
Sbjct: 404 GNNNFAIDSTSGVVTLQTQLEYKGNPAQDVIDLVVTAT 441


>SB_29931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = +2

Query: 65  IFNLALVQAEFGTPYLRKSRLCHQ------WSCINTKLGFPESLPPREQSAVVLSRILPD 226
           + NL L+  +F T    ++ L HQ      W  +        S+P RE    + + I P 
Sbjct: 70  LLNLGLLSTDFPTNPHTRAALIHQRVPKDTWKTVTDAWNGYHSVPLREADRHLTTFITPF 129

Query: 227 GAWR 238
           G WR
Sbjct: 130 GRWR 133


>SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20)
          Length = 1074

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +1

Query: 274  NRPRTYTNTCPGQGLL---HCLMYQMIENCPEESLRKDDVCSPVSSLSGFNYMFSQSMYE 444
            +RP TY     G+  L   H +  + + + P+E +  DDV +P  + S F Y +S+    
Sbjct: 891  DRPLTYVYDEVGEVELTPAHLMYGRRLNSFPDEVVEPDDVANPDHN-SRFRYRWSKEYLA 949

Query: 445  DLEE 456
             L E
Sbjct: 950  SLRE 953


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,408,064
Number of Sequences: 59808
Number of extensions: 629616
Number of successful extensions: 1495
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)