Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0141
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    28   1.7  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    26   5.2  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    25   9.2  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 242 LSSLHPVKIDQLTIKILSYRA*YLTLNVNWIQIKCFQNVNQRI 370
           L  LH  KID+L   + ++RA Y ++  +  Q++    +N+RI
Sbjct: 569 LRELH-TKIDELRETVSNFRADYNSIRTSLNQLEAASGINERI 610


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 469 SDATTSTSHQNALTETPHKPKVVLK 543
           +DA  S S+ N  TE P  PK ++K
Sbjct: 84  TDAAASDSNTNFGTENPKPPKAIIK 108


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -3

Query: 391 RSKHQSVYSLVHILETFYLNPIHIQSQIL 305
           RS  + + S +H+LE FY++P+ I++Q +
Sbjct: 317 RSITKIIASTLHLLEVFYIHPL-IRAQCI 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,634
Number of Sequences: 5004
Number of extensions: 69886
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)