Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0141
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0403 - 3185897-3186931,3187200-3187311,3187425-3187735,318... 32 0.44
07_03_0059 + 12901191-12901316,12901333-12901452,12901891-129021... 29 4.1
06_03_0401 + 20424932-20425847,20425908-20426144,20426184-204262... 29 5.4
06_01_0614 + 4448129-4448157,4448733-4449231,4449512-4449550,444... 29 5.4
05_03_0336 - 12643942-12644816,12645021-12645276,12645667-12646380 29 5.4
02_05_1019 - 33549576-33550247,33550885-33551121,33551206-335513... 29 5.4
12_01_1083 - 11268130-11268290,11268330-11268585,11268946-11269551 28 9.5
08_02_0448 + 17239987-17240489,17240633-17241042,17241183-172414... 28 9.5
06_01_1114 - 9179614-9180167,9180223-9180544,9181524-9181820,918... 28 9.5
03_05_0005 + 19470301-19471180,19471262-19471905,19472027-19472596 28 9.5
>12_01_0403 -
3185897-3186931,3187200-3187311,3187425-3187735,
3188112-3188324,3188834-3189052
Length = 629
Score = 32.3 bits (70), Expect = 0.44
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 190 FVYYSGWWWSWGRLFLLDMWSRFK 119
F YYS W SWG F+ W R+K
Sbjct: 495 FRYYSHQWRSWGACFVQGAWRRYK 518
>07_03_0059 +
12901191-12901316,12901333-12901452,12901891-12902170,
12902348-12902895,12902943-12903122,12904331-12904846
Length = 589
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 265 NRPVNNQNIKLQGIVSDFECELDSNKM 345
++ V N N+KL+G S F+ +L NKM
Sbjct: 111 DKDVENINVKLEGFASAFQNQLSFNKM 137
>06_03_0401 +
20424932-20425847,20425908-20426144,20426184-20426262,
20426308-20427220
Length = 714
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 217 PFY*KTKCAVIFTSR---KNRPVNNQNIKLQGIVSDFECELDSNKM 345
P+Y + K + + ++ + N N+KL G S F+ +L NKM
Sbjct: 301 PYYQEAKTTDALSKKLAANDKNLENMNVKLDGFASAFQNQLSFNKM 346
>06_01_0614 +
4448129-4448157,4448733-4449231,4449512-4449550,
4449590-4449802,4449941-4450227,4450456-4450567,
4451515-4451751,4451857-4451957,4452285-4452384,
4452509-4453141
Length = 749
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 190 FVYYSGWWWSWGRLFLLDMWSRFK 119
F YYS W +W F+ W R+K
Sbjct: 664 FRYYSHHWRTWAACFIQAAWRRYK 687
>05_03_0336 - 12643942-12644816,12645021-12645276,12645667-12646380
Length = 614
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 265 NRPVNNQNIKLQGIVSDFECELDSNKMFPKCEPKNIQTGALI 390
++ + N N+KL G S F+ +L NKM E + Q ALI
Sbjct: 259 DKVLENNNVKLDGFASAFQNQLSFNKMI---ETQLAQLAALI 297
>02_05_1019 -
33549576-33550247,33550885-33551121,33551206-33551317,
33551998-33552215,33553084-33553194
Length = 449
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 190 FVYYSGWWWSWGRLFLLDMWSRFK 119
F YYS W +W F+ W R+K
Sbjct: 357 FRYYSHHWRTWASCFIQAAWRRYK 380
>12_01_1083 - 11268130-11268290,11268330-11268585,11268946-11269551
Length = 340
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 265 NRPVNNQNIKLQGIVSDFECELDSNKMFPKCEPKNIQTGALI 390
++ + N N+KL G S F+ +L NKM E + Q AL+
Sbjct: 223 DKTLENINVKLDGFASAFQDQLSFNKMI---ETRLAQLAALV 261
>08_02_0448 +
17239987-17240489,17240633-17241042,17241183-17241406,
17241590-17242018,17244726-17244809
Length = 549
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 274 VNNQNIKLQGIVSDFECELDSNKMFPKCEPKNIQTGA 384
+ N N+KL+G S F+ +L NKM K + A
Sbjct: 277 LENINVKLEGFASAFQNQLSFNKMIDSAGTKQARKEA 313
>06_01_1114 -
9179614-9180167,9180223-9180544,9181524-9181820,
9181991-9182878,9182896-9182941,9182964-9183350,
9183648-9183985
Length = 943
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 265 NRPVNNQNIKLQGIVSDFECELDSNKM 345
++ + N+N+KL G S F+ +L NKM
Sbjct: 282 DKVLENKNVKLDGFASVFQNQLSFNKM 308
>03_05_0005 + 19470301-19471180,19471262-19471905,19472027-19472596
Length = 697
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 274 VNNQNIKLQGIVSDFECELDSNKM 345
V N+N+KL G S F+ +L NKM
Sbjct: 317 VENRNVKLDGFASAFQNQLCFNKM 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,061,836
Number of Sequences: 37544
Number of extensions: 439171
Number of successful extensions: 1106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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