Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0141
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95309-1|CAB08559.2|  446|Caenorhabditis elegans Hypothetical pr...    33   0.23 
AL023844-10|CAA19530.3|  503|Caenorhabditis elegans Hypothetical...    28   6.5  
AL023844-9|CAH04760.1|  512|Caenorhabditis elegans Hypothetical ...    28   6.5  

>Z95309-1|CAB08559.2|  446|Caenorhabditis elegans Hypothetical
           protein H36L18.1 protein.
          Length = 446

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -3

Query: 235 WFSNKMGRFSWNIRLFVYYSGWWWSWGRLFLLDMWSRFKHITKRIIIPISSWTVAVHSIH 56
           +F   M R S+ I LF     ++W + R     +W R         +PI SW     +++
Sbjct: 291 YFFKSMQRESYRIELFTILESYFWQYSRYGKHKLWPRAIVSIFENQVPIVSWLRVSITVY 350

Query: 55  --RHVRGRSSR 29
             RH   RSS+
Sbjct: 351 CKRHFFSRSSK 361


>AL023844-10|CAA19530.3|  503|Caenorhabditis elegans Hypothetical
           protein Y48A6B.6a protein.
          Length = 503

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 367 SLVHILETFYLNPIHIQSQILCPV 296
           SL HI+  FYLN +  Q   LCPV
Sbjct: 139 SLFHIVYQFYLNGVIHQPSNLCPV 162


>AL023844-9|CAH04760.1|  512|Caenorhabditis elegans Hypothetical
           protein Y48A6B.6b protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 367 SLVHILETFYLNPIHIQSQILCPV 296
           SL HI+  FYLN +  Q   LCPV
Sbjct: 175 SLFHIVYQFYLNGVIHQPSNLCPV 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,227,610
Number of Sequences: 27780
Number of extensions: 395275
Number of successful extensions: 972
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)