Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0140
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...   122   4e-29
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   1.7  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    25   6.9  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   9.1  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    25   9.1  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   9.1  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   9.1  

>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score =  122 bits (294), Expect = 4e-29
 Identities = 62/103 (60%), Positives = 80/103 (77%)
 Frame = +1

Query: 322 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 501
           MSE  +A++ +EIWKI++L+K L    GNGTSMI+LIIPP +QISR S MLA+E+GTASN
Sbjct: 1   MSE--TAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASN 58

Query: 502 IQARVNRLSVLGAITSVQHRLQAVY*SGHQTGLVIYCGTIVTE 630
           I++RVNRLSVL AITS + RL+ +Y      GLVIYCG ++ E
Sbjct: 59  IKSRVNRLSVLSAITSTRERLK-LYNKVPDNGLVIYCGEVIME 100


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +1

Query: 301 LNKKRNKMSEE--SSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 474
           LN+  N +S    SSAD  +E W   K I S + +R   TS  S +  P +    +   L
Sbjct: 10  LNRLNNGLSSNNGSSADEGLEHWNPLKKIHSADSSRRRSTS--SQLNQPSNY--HMHSSL 65

Query: 475 ADEFGTASNIQARVNRL 525
            +E    S+I +  +R+
Sbjct: 66  HEEVSVGSSIASPSSRI 82


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 135 DRSREVSRPSGSN*IRAV*NWNSGSLSIVFVYLKFWCCAKHYF 263
           D S++++ P   N I A  + +SGS     +YL +WC  +H+F
Sbjct: 271 DSSQDITMPP--NEIIAEESLDSGS-DTETLYLNYWCKIRHFF 310


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = +3

Query: 516 ESSLSAWRNYF---CTAPTSSCILKWPPNG 596
           E SLS WRNYF    T P  S  L    NG
Sbjct: 31  EESLSDWRNYFDEKLTIPGESGALNGTING 60


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 424 ISSMFHFLWPFPNSL*VSLSSIFRHF--DRPTILQTFCFAFYLTN*PQTLY 278
           +S  F    P+ + L   +S++ + +   RP I QTFC    + N P  +Y
Sbjct: 264 VSYAFPTFPPYSDRLKRLISTLLQQYPWQRPNIYQTFCEICKMRNVPIHIY 314


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 190 QTALI*FEPDGRDTSRLRSHFLVYIYVCGCS 98
           Q   I FEP   D  +LR  +  Y  + GC+
Sbjct: 36  QQVAIKFEPRRSDAPQLRDEYRTYKLLAGCT 66


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 114 TSAVARTFLLVRGFLDFFLFRLPLSM---WNTKFRHYRNKT 1
           +S +  TFLL  GF++   F L +S    +   FR++  +T
Sbjct: 442 SSMITMTFLLTFGFINLSCFLLRISSTPNFRPTFRYFNRRT 482


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 337 SADRNVEIWKIKKLIKSL 390
           SAD+ ++IW  +KL+KS+
Sbjct: 155 SADKLIKIWNGEKLVKSI 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,191
Number of Sequences: 5004
Number of extensions: 57243
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)