Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0140
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1085 - 23851852-23853165 148 4e-36
03_05_0830 + 28034179-28035492 147 7e-36
01_07_0127 + 41234826-41236136 144 7e-35
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 30 1.3
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 29 4.1
10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907 28 5.4
02_05_0546 + 29889861-29890182,29891057-29892798 28 7.1
09_06_0037 + 20389976-20391016,20391103-20391723 27 9.4
04_03_0594 - 17733827-17735085,17735576-17735642,17736379-177364... 27 9.4
>07_03_1085 - 23851852-23853165
Length = 437
Score = 148 bits (358), Expect = 4e-36
Identities = 73/105 (69%), Positives = 87/105 (82%)
Frame = +1
Query: 322 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 501
MS+ DRN+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQI+RV+KML DE+GTASN
Sbjct: 1 MSDSHETDRNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQIARVAKMLGDEYGTASN 60
Query: 502 IQARVNRLSVLGAITSVQHRLQAVY*SGHQTGLVIYCGTIVTEEG 636
I++RVNR SVL AITS Q RL+ +Y GLV+Y GTIVTE+G
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLK-LYNKVPPNGLVLYTGTIVTEDG 104
>03_05_0830 + 28034179-28035492
Length = 437
Score = 147 bits (356), Expect = 7e-36
Identities = 72/105 (68%), Positives = 87/105 (82%)
Frame = +1
Query: 322 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 501
MS+ D+N+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQ+SRV+KML DE+GTASN
Sbjct: 1 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60
Query: 502 IQARVNRLSVLGAITSVQHRLQAVY*SGHQTGLVIYCGTIVTEEG 636
I++RVNR SVL AITS Q RL+ +Y GLV+Y GTIVTE+G
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLK-LYNKVPPNGLVLYTGTIVTEDG 104
>01_07_0127 + 41234826-41236136
Length = 436
Score = 144 bits (348), Expect = 7e-35
Identities = 69/105 (65%), Positives = 86/105 (81%)
Frame = +1
Query: 322 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 501
M++ D+N+EIWK+KKLIK L+ ARGNGTSMISLI+PP+DQ+SRV+KML DE+GTASN
Sbjct: 1 MADSHETDKNIEIWKVKKLIKGLDAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60
Query: 502 IQARVNRLSVLGAITSVQHRLQAVY*SGHQTGLVIYCGTIVTEEG 636
I++RVNR SVL AITS Q RL+ +Y GLV+Y GTIVT+EG
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLK-LYNRVPPNGLVLYTGTIVTDEG 104
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 271 YTNIVFVVN*LNKKRNKMSEESSADRNVEIWKIKKLIKSLE 393
Y + ++N L+KK +M E+ D + EI +KKL+K +E
Sbjct: 347 YAELYQIINDLSKKTEEM-EKMKVDSDQEILLLKKLVKVME 386
>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/57 (26%), Positives = 33/57 (57%)
Frame = +1
Query: 355 EIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIQARVNRL 525
E+ +++KL+ S+E+ GNG M++ +D +S V+ L D + + +Q ++ +
Sbjct: 1125 EVKELEKLVDSIEVDIGNGGKMMA---SDEDPVSEVNSKLRDAAVSLNQMQDLISAI 1178
>10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907
Length = 159
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 343 DRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLAD 480
+R++E+W+I K ++ A+ TS ISL+ +++RVS D
Sbjct: 93 ERDLEVWRISKEVQVNMEAQTKSTSRISLL----GEVNRVSTRTVD 134
>02_05_0546 + 29889861-29890182,29891057-29892798
Length = 687
Score = 27.9 bits (59), Expect = 7.1
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +1
Query: 307 KKRNKMSEESSADRNVEIWKIKKLIKSL---EMARGNGTSMISLIIPPKDQISRVSKMLA 477
+K +++S E +D N I + IKS E+ G M+ IPPKDQ + ++
Sbjct: 428 QKSHEISGEKCSD-NSSIVASEANIKSKADSELISGRDVEMVDNDIPPKDQTNNIA--TE 484
Query: 478 DEFGTASNIQARVNRLSVLGAITSVQ 555
D+ T +A + + A T +Q
Sbjct: 485 DKPSTQETSEAHKMEVVEVSANTGIQ 510
>09_06_0037 + 20389976-20391016,20391103-20391723
Length = 553
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 567 SCILKWP-PNGPSYILWYYRDRRR 635
+C+L W P GP++ W++ RRR
Sbjct: 45 TCLLHWSFPGGPAWGRWWWTRRRR 68
>04_03_0594 -
17733827-17735085,17735576-17735642,17736379-17736413,
17736810-17737665
Length = 738
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 504 SSTCESSLSAWRNYFCTAPTSSCILKWPPNGPSYI 608
+STCE + + +Y C + S C+ NGP YI
Sbjct: 233 NSTCEQAKTNSDSYMCISSNSVCLNS--RNGPGYI 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,168,959
Number of Sequences: 37544
Number of extensions: 345047
Number of successful extensions: 857
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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