Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0140
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical...   156   1e-38
J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein ( C.ele...    31   0.52 
AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kina...    31   0.52 
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    29   2.1  
AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF100655-7|ABO16448.1|  375|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF100655-5|ABO16449.1|  375|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z81132-6|CAB03437.1|  315|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical p...    28   4.9  
AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical...    28   4.9  
AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical...    28   4.9  
AF036694-3|AAB88343.3|  344|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical
           protein T05H4.6 protein.
          Length = 443

 Score =  156 bits (378), Expect = 1e-38
 Identities = 74/102 (72%), Positives = 92/102 (90%)
 Frame = +1

Query: 331 ESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIQA 510
           + +ADRNVE+WKIK+LIKSLE+ARGNGTSMISLIIPPKDQ++R+ +MLA+E+GTASNI++
Sbjct: 13  DDAADRNVEMWKIKRLIKSLELARGNGTSMISLIIPPKDQVARIQRMLAEEYGTASNIKS 72

Query: 511 RVNRLSVLGAITSVQHRLQAVY*SGHQTGLVIYCGTIVTEEG 636
           RVNRLSVLGAITSVQ RL+ +Y      GLV+YCGTI+T+EG
Sbjct: 73  RVNRLSVLGAITSVQGRLK-LYNKVPPNGLVVYCGTIMTDEG 113


>J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein (
           C.elegans casein kinaseII-alpha gene, complete cds. ).
          Length = 360

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 364 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 474
           KIK+ IK LE  RG GT++I+L+   KD ISR   ++
Sbjct: 76  KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALI 111


>AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kinase
           protein 3 protein.
          Length = 360

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 364 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 474
           KIK+ IK LE  RG GT++I+L+   KD ISR   ++
Sbjct: 76  KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALI 111


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/74 (24%), Positives = 37/74 (50%)
 Frame = +1

Query: 304 NKKRNKMSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADE 483
           NKKR++ S+++   +N EI  +KK + SL  ++    +M S I    +   ++ +     
Sbjct: 124 NKKRDEASKKTLNSKNEEIEHLKKRVISLSNSQSENETMKSKISKLTESEKKLKETNGKV 183

Query: 484 FGTASNIQARVNRL 525
             + + +  RV+ L
Sbjct: 184 TKSRNQLSERVSEL 197


>AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical
           protein Y49C4A.1 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 133 HFLVYIYVCGCSDFSSCAGILGFFLI 56
           HFL+      CS+ ++C  I+ FF++
Sbjct: 79  HFLIVYLALPCSNIAACRSIIAFFIV 104


>AF100655-7|ABO16448.1|  375|Caenorhabditis elegans Hypothetical
           protein C44C8.2 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
 Frame = +1

Query: 244 VVQSIILVIYTNIVF----VVN*LNKKRNKMSEESSADRNVEIWKIKKLIKS-LEMARGN 408
           VV+S  ++I+ +IVF    ++N LNK R+K     S DR  E+  +  LI + +E  R  
Sbjct: 248 VVESTGILIFQSIVFFDNDMLNNLNKLRHK-RVHLSFDRFFELQNVVWLIDNWIEFGRNV 306

Query: 409 GTS-MISLIIPPK-----DQISRVSKMLADEFGTASNIQARVNRLSVL 534
           GT   + +++  K     + + R  K   DE     N+   +N  S L
Sbjct: 307 GTHYSLDVVVENKGWEILEIVKRNHKERIDEKSDRENVIIHMNNTSDL 354


>AF100655-5|ABO16449.1|  375|Caenorhabditis elegans Hypothetical
           protein C44C8.3 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
 Frame = +1

Query: 244 VVQSIILVIYTNIVF----VVN*LNKKRNKMSEESSADRNVEIWKIKKLIKS-LEMARGN 408
           VV+S  ++I+ +IVF    ++N LNK R+K     S DR  E+  +  LI + +E  R  
Sbjct: 248 VVESTGILIFQSIVFFDNDMLNNLNKLRHK-RVHLSFDRFFELQNVVWLIDNWIEFGRNV 306

Query: 409 GTS-MISLIIPPK-----DQISRVSKMLADEFGTASNIQARVNRLSVL 534
           GT   + +++  K     + + R  K   DE     N+   +N  S L
Sbjct: 307 GTHYSLDVVVENKGWEILEIVKRNHKERIDEKSDRENVIIHMNNTSDL 354


>Z81132-6|CAB03437.1|  315|Caenorhabditis elegans Hypothetical
           protein T26E4.8 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 504 SSTCESSLSAWRNYFCTAPTSSCILKWPPNGPS 602
           S T    LSA++NY+ ++    C+L +  NGP+
Sbjct: 237 SQTGSRLLSAYQNYYSSSLLEYCMLTYLKNGPT 269


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 360 MEDKETYKEFGNGQRKWNIDDIPDHST*GSNLESIKDVG 476
           M DK T +  GN    ++ + +        N ES+KD+G
Sbjct: 476 MNDKNTVQRLGNAWAVFDFEGVTQLRDFAKNYESLKDIG 514


>U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical
           protein B0336.3 protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 400 RGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIQARVN 519
           R N T  ++ I P  + I+++++  A  FGT  NIQ R N
Sbjct: 363 RDNCTLQVAKIPPEMNTIAKLNEHFAT-FGTVDNIQVRYN 401


>AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27b protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +2

Query: 35  HMLRGNRNKKKSKNPRTRRKVRAT 106
           H ++GN  KK++K+ +TR+K R++
Sbjct: 84  HEVQGNVTKKRTKHSKTRQKARSS 107


>AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27a protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +2

Query: 35  HMLRGNRNKKKSKNPRTRRKVRAT 106
           H ++GN  KK++K+ +TR+K R++
Sbjct: 192 HEVQGNVTKKRTKHSKTRQKARSS 215


>AF036694-3|AAB88343.3|  344|Caenorhabditis elegans Hypothetical
           protein CD4.5 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 312 LFI*LINHKHYICINN*NNALHNTKTLNKRILWKG 208
           ++I  ++ K  +CI+N  N  +N+  L K   W+G
Sbjct: 261 VYIRSVSPKLKVCIDNFENCPYNSPQLRKDAFWRG 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,646
Number of Sequences: 27780
Number of extensions: 321796
Number of successful extensions: 806
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)