Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0140
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47880.1 68418.m05915 eukaryotic peptide chain release factor...   147   5e-36
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot...   143   8e-35
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot...   141   3e-34
At4g14480.1 68417.m02233 protein kinase family protein contains ...    29   2.0  
At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains ...    29   2.0  
At5g56240.1 68418.m07018 expressed protein                             28   6.0  
At3g59610.1 68416.m06651 F-box family protein / jacalin lectin f...    28   6.0  
At1g71500.1 68414.m08265 Rieske [2Fe-2S] domain-containing prote...    28   6.0  
At4g02420.1 68417.m00327 lectin protein kinase, putative similar...    27   7.9  

>At5g47880.1 68418.m05915 eukaryotic peptide chain release factor
           subunit 1-1 (ERF1-1) identical to SP|Q39097 Eukaryotic
           peptide chain release factor subunit 1-1 (eRF1-1)
           (Eukaryotic release factor 1-1) (Omnipotent suppressor
           protein 1 homolog 1) (SUP1 homolog 1) {Arabidopsis
           thaliana}, eukaryotic release factor 1 homolog
           GI:1155261 from [Arabidopsis thaliana]; contains Pfam
           profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2,
           PF03465 eRF1 domain 3
          Length = 436

 Score =  147 bits (357), Expect = 5e-36
 Identities = 72/105 (68%), Positives = 88/105 (83%)
 Frame = +1

Query: 322 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 501
           M +++  D+N+EIWKIKKLIKSLE ARGNGTSMISLI+PP+DQ+SRV+KML DE+GTASN
Sbjct: 1   MGDKNDDDKNIEIWKIKKLIKSLEAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60

Query: 502 IQARVNRLSVLGAITSVQHRLQAVY*SGHQTGLVIYCGTIVTEEG 636
           I++RVNR SVLGAITS Q RL+ +Y      GLV+Y GTIV E+G
Sbjct: 61  IKSRVNRQSVLGAITSAQQRLK-LYNRVPPNGLVLYTGTIVNEDG 104


>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 435

 Score =  143 bits (347), Expect = 8e-35
 Identities = 69/102 (67%), Positives = 86/102 (84%)
 Frame = +1

Query: 331 ESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIQA 510
           +  +D+N+EIWKIKKLIK LE ARGNGTSMISLI+PP+DQ++RV+KMLADE+GTASNI++
Sbjct: 3   DQESDKNIEIWKIKKLIKGLETARGNGTSMISLIMPPRDQVARVTKMLADEYGTASNIKS 62

Query: 511 RVNRLSVLGAITSVQHRLQAVY*SGHQTGLVIYCGTIVTEEG 636
           RVNR SVL AITS Q RL+ +Y      GLV+Y GTIVT++G
Sbjct: 63  RVNRQSVLSAITSAQQRLK-LYNKVPPNGLVLYTGTIVTDDG 103


>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 434

 Score =  141 bits (342), Expect = 3e-34
 Identities = 72/105 (68%), Positives = 86/105 (81%)
 Frame = +1

Query: 322 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 501
           M+EE  AD N+EIWKIKKLIK LE ARGNGTSMISLI+PP+DQ+SRV+KML DE+GTASN
Sbjct: 1   MAEE--ADTNIEIWKIKKLIKGLESARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 58

Query: 502 IQARVNRLSVLGAITSVQHRLQAVY*SGHQTGLVIYCGTIVTEEG 636
           I++RVNR SVL AITS Q RL+ +Y      GLV+Y GTIV ++G
Sbjct: 59  IKSRVNRQSVLSAITSAQQRLK-LYNKVPTNGLVLYTGTIVNDDG 102


>At4g14480.1 68417.m02233 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 487

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/76 (27%), Positives = 37/76 (48%)
 Frame = +1

Query: 313 RNKMSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGT 492
           +N+  E    D+++ + K+K L KSLE  R   + +I  +   K++ SR  ++L  E   
Sbjct: 407 KNQEGEVVGFDKDLVLEKLKVLKKSLEHQRARVSIIIEALSGDKEEKSREEELL--EMVE 464

Query: 493 ASNIQARVNRLSVLGA 540
              I+    +L  L A
Sbjct: 465 KLKIELETEKLKTLRA 480


>At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains
           similarity to NAD kinase [Homo sapiens]
           gi|20070086|gb|AAM01195; contains Pfam domain, PF01513:
           ATP-NAD kinase
          Length = 985

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 382 KSLEMARGNGTSMISLIIPPKDQISR 459
           KS+   RGNG S   + +PP D +SR
Sbjct: 561 KSISDNRGNGFSAAPIAVPPSDNLSR 586


>At5g56240.1 68418.m07018 expressed protein 
          Length = 986

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 333 IVGRSKCRNMEDKETYKEFGNGQRKWNIDDIPDHST*GSNLESIKDVG 476
           I G++ C+  ED+    E G G     +D IP     GS L S +D+G
Sbjct: 668 IYGQTSCK--EDERFDSEVGQGSLFVEVDTIPIPGPPGSFLPSPRDMG 713


>At3g59610.1 68416.m06651 F-box family protein / jacalin lectin
           family protein contains Pfam profile PF01419:
           Jacalin-like lectin domain
          Length = 521

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 322 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQIS 456
           + +E    RN+EIW  K+ IK+ +       +++S+++P    +S
Sbjct: 251 LEQEIYNTRNIEIWVTKETIKNGDGEAVEWVNLMSVLVPEWSSLS 295


>At1g71500.1 68414.m08265 Rieske [2Fe-2S] domain-containing protein
           contains Pfam profile PF00355: iron-sulfur
           cluster-binding protein, rieske family
          Length = 287

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 504 SSTCESSLSAWRNYFCTAPTSSCILKWPPNGPSYILWYYRDRR 632
           ++T  SSL   RNY  T P  S  ++ PP   +  L+  R+RR
Sbjct: 2   ATTASSSLP--RNYSFTTPRPSSFIRGPPLARTLPLYLRRNRR 42


>At4g02420.1 68417.m00327 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 669

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +1

Query: 220 YSFI*SFGVVQSIILVIYTNIVFVVN*LNKKRNKMSEESSADRNVEIWKIKKLIKSLEMA 399
           Y F  ++  + S++L+ +  I+F+V  + K+R K +EE   D   E  K +   K L  A
Sbjct: 288 YRFYKNWVPLISLLLIPFLLIIFLVRFIMKRRRKFAEEVE-DWETEFGKNRLRFKDLYYA 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,813
Number of Sequences: 28952
Number of extensions: 295556
Number of successful extensions: 729
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)