Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0139
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    30   0.31 
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   2.2  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   3.8  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    26   5.0  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   6.6  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   6.6  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   8.7  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    25   8.7  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 216 PSHC-RPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQ 88
           PSH  R  LHP ++ Q QP   S + G ++ + +Q P+ +  +Q
Sbjct: 54  PSHLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPPSVSIASQ 97


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 403 VNCYDYMAIHKKGGYGCTGELP 468
           +N  DY+ ++  GGYGC+ + P
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 222 VSPSHCRPCLHPEIAWQMQPRHT 154
           VS  HC  C H E  W    R+T
Sbjct: 204 VSLKHCEDCFHWEAVWSSITRNT 226


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -3

Query: 477 IVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSSHVVLDG---LRGAVRVHSAARVG 307
           I +R  AG  + SLL   + VI V+H ++V         VL G   + G V +  + R G
Sbjct: 252 IKQRLKAGRVIRSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREG 311

Query: 306 I 304
           I
Sbjct: 312 I 312


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 236 RITWGYWLMPENPLSMVSHLTLRMPTLAALWTR 334
           RIT+ YW++  N ++ VS +  R    +  W R
Sbjct: 233 RITFPYWILYSNEITNVSGIGWRYLLRSIEWAR 265


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 138 SSETSAKQTPATNSNAQNLITAEAIA 61
           SS T+A  TP  + +++  I AEAIA
Sbjct: 215 SSSTTALSTPRQSMDSKRTINAEAIA 240


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -2

Query: 220 FTLALQTLLASRDSLANAAETHLRHRGEFRDIGETDSGNQQQRTK 86
           F  + QT L+ R    N   + L+  G F    +TD  N     K
Sbjct: 33  FKKSSQTYLSKRSEKLNEHNSKLKSSGSFTSNSQTDLSNSPSSKK 77


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 249 PHVMRKRPHVSPSHCRPCLHPEI 181
           PH+++K  ++   H  PC+H E+
Sbjct: 241 PHLVQKSYYLQNRHVFPCVHWEV 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,566
Number of Sequences: 5004
Number of extensions: 51316
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)