Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0139
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0929 - 7344911-7345978 31 0.73
08_01_0490 + 4284192-4284740 29 2.2
07_03_1369 + 26087947-26088039,26088396-26089073 29 2.2
04_01_0066 - 652339-652382,652641-653593,654492-654568,655812-65... 29 2.2
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 29 2.9
09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718... 29 3.9
04_04_0534 + 26071227-26071811 29 3.9
06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867 28 5.1
07_01_0811 - 6377328-6377628,6377708-6377878,6377961-6378145,637... 28 6.8
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768 27 8.9
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 27 8.9
09_02_0124 - 4546722-4547107,4547677-4547854,4548027-4548215,454... 27 8.9
07_03_1670 - 28505732-28506426,28508202-28509309 27 8.9
06_01_1147 + 9606860-9606989,9607078-9607811,9607890-9608126,960... 27 8.9
04_04_0351 + 24615858-24616448 27 8.9
03_06_0616 - 35121755-35121913,35121994-35122109,35122198-351223... 27 8.9
>01_01_0929 - 7344911-7345978
Length = 355
Score = 31.1 bits (67), Expect = 0.73
Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Frame = +1
Query: 106 CRSLFRRCLGTP---PCDGGVSRLHLP---GYLWMQARS---AVRG*NVRPLPHHMGLLA 258
C L C+G P PC + P G + A S +VRG V LPH G +
Sbjct: 41 CPHLSVPCVGLPLPPPCPPPPGAIRFPLWHGAATIPASSVCRSVRGHFVEHLPHVEGRVP 100
Query: 259 DAGKPTINGLSPD-APDAYSSCTVDPYCAAQTVQNYMRRFGQDCNGDG 399
G+ G+ P+ P PY AA T+Q M ++ G G
Sbjct: 101 GDGEGAFAGVPPEMLPPKKRLLRYHPYAAAWTIQE-MANHAREQGGFG 147
>08_01_0490 + 4284192-4284740
Length = 182
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 164 RDTPPSQGGVPRHRRNRLRQP 102
RD PP GG P H LRQP
Sbjct: 40 RDAPPETGGGPHHNAILLRQP 60
>07_03_1369 + 26087947-26088039,26088396-26089073
Length = 256
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 65 MASAVIRFCALLLVAGVCFADVSELPPVTEVCLGCICQAISGC 193
M AV+ ALLL AGV AD + + + G C +GC
Sbjct: 1 MKLAVVAVAALLLAAGVASADEFDFFYLVQQWPGSFCDTQAGC 43
>04_01_0066 -
652339-652382,652641-653593,654492-654568,655812-655917,
656200-656261,656676-656784,657015-657385
Length = 573
Score = 29.5 bits (63), Expect = 2.2
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +1
Query: 220 NVRPLPHHMGLLADAGKPTINGLSPDAPDA-YSSCTVDPYCAAQTVQNYMRRFGQDCNGD 396
++RP+ L D PTI LSPD PD ++S + A++ + + M+RF Q
Sbjct: 333 HIRPMLLAYDTLQDV-LPTIRELSPDEPDEFFTSILHNMRNASRGIIDNMKRFIQH---- 387
Query: 397 GVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQCINVSRST 519
V +D +AIH T N + +FN N+ ST
Sbjct: 388 -KVQTWDNIAIHP------TTCFLINAIKIFNVHKNLLHST 421
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = -3
Query: 249 PHVMRKRPHVSPSHCRPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQNLITAE 70
PH R R SP+H RP LH + PR T TG ++ T ++ N ++ L+ +
Sbjct: 412 PHTPRPRSPHSPTHPRPRLHHPL-----PRPTR-TGVANVTDDRRGEECNGGSRPLLPSR 465
Query: 69 A 67
A
Sbjct: 466 A 466
>09_02_0317 +
7186148-7186243,7186406-7186572,7186766-7186878,
7187059-7187133,7187215-7187328,7187545-7187612,
7187690-7187773,7187966-7188019,7188104-7188184,
7188279-7188372,7188501-7188574,7188656-7188766,
7188976-7189032,7189119-7189223,7189584-7189687,
7190021-7190186,7190279-7190416
Length = 566
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 271 PTINGLSPDAPDAYSSCTVDPYCAAQTVQNYMRRFGQ 381
P + G + S+ T+DP CA VQ + FGQ
Sbjct: 29 PCLEGKAIRVEFGDSTTTIDPTCANMVVQEFPNTFGQ 65
>04_04_0534 + 26071227-26071811
Length = 194
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 317 AALWTRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPA 460
A L TR RRP++ + R A W +TTWR T + G P+
Sbjct: 90 ARLATRRRGRRPARRRRDCAWRRPAAWRW---LTTWRRTASKPDGYPS 134
>06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867
Length = 237
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 207 CRPCLHPEIAWQMQPRHTSVTGGSSETSAK-QTPATNSNAQNLITAEAIAS 58
CR L P + ++++PR + T S+ SA + ATN+ +L +A AS
Sbjct: 66 CRRHLQPCLRFRLRPRQPAATYTSTSASASPRLLATNTTEASLTSATDCAS 116
>07_01_0811 -
6377328-6377628,6377708-6377878,6377961-6378145,
6378255-6378797,6378879-6379304,6379383-6380116,
6380205-6380334
Length = 829
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 189 PEIAWQMQPRHTSVTGGSSETSAKQTPATNS 97
PEI Q +HTS++GG+S + + + P + +
Sbjct: 40 PEIHELQQEQHTSMSGGTSASRSSRNPRSQN 70
>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
Length = 1004
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 227 GLFRITWGYWLMPENPLSMVSHL 295
GLF+ W W PE+ S VSHL
Sbjct: 468 GLFKRIWLLWKGPESAKSEVSHL 490
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 82 QVLCVAVGCRSLFRRCLGTPPCDGGVSRLHLPGY 183
+V C RSL C PP GG +H+ Y
Sbjct: 36 RVRCTLAVTRSLLNSCCRAPPSPGGGGGVHVATY 69
>09_02_0124 -
4546722-4547107,4547677-4547854,4548027-4548215,
4548602-4548712,4549024-4549071,4549825-4549966,
4550349-4550695
Length = 466
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 237 RKRPHVSPSHCRPCLHPEIAWQ 172
R + H PS C+ LHP + W+
Sbjct: 428 RGKSHRLPSKCKRRLHPRVVWE 449
>07_03_1670 - 28505732-28506426,28508202-28509309
Length = 600
Score = 27.5 bits (58), Expect = 8.9
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Frame = +2
Query: 68 ASAVIRFCALLLVAGVCFADVSELPPVTEVCL-GCICQAISGCKQGLQCEGETCGLFRIT 244
A+AV R CA L VC + +S +P + L I + + ++ C + +
Sbjct: 65 AAAVDRHCAGTLHRDVCVSTLSTIPNLARKPLRDVISEVVGRAASAVRASSSNCTSY-LQ 123
Query: 245 WGYWLMPENPLSMVSHLTLRMPTLAALWTRTAPRRPSKTT*EDLARTATATEWSTAMT 418
L + L++ L L TL L T A +T E+ A T S AMT
Sbjct: 124 RPRQLRTRDRLALSDCLELFGHTLDLLGTAAAELSAGNSTAEESA-AGVQTVLSAAMT 180
>06_01_1147 +
9606860-9606989,9607078-9607811,9607890-9608126,
9608433-9609265,9609598-9609856,9610294-9610377,
9610484-9610498
Length = 763
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 189 PEIAWQMQPRHTSVTGGSSETSAKQTPATNS 97
PEI Q +HTS++GG+S + + + P + +
Sbjct: 40 PEIQELPQEQHTSMSGGTSASRSSRNPRSQN 70
>04_04_0351 + 24615858-24616448
Length = 196
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 346 QTVQNYMRRFGQ-DCNGDGVVNCYDYMAIHKKGGYGCTG 459
+T + R GQ D +GDG V+ ++++ + + GG+ G
Sbjct: 158 RTAEECRRMIGQVDRDGDGRVDFHEFLQMMRGGGFAALG 196
>03_06_0616 -
35121755-35121913,35121994-35122109,35122198-35122342,
35122475-35122646,35123225-35123289
Length = 218
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 115 DSGNQQQRTKPDHSRSHCVENTQQKNYN 32
D N+Q D + +H VENT + NY+
Sbjct: 31 DEYNEQDNWDNDRTENHVVENTTKLNYH 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,948,713
Number of Sequences: 37544
Number of extensions: 412101
Number of successful extensions: 1320
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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