Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0139
(614 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24579| Best HMM Match : rve (HMM E-Value=0.085) 29 2.3
SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05) 28 5.2
SB_11718| Best HMM Match : NHL (HMM E-Value=1.5e-12) 28 5.2
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_25357| Best HMM Match : Homeobox (HMM E-Value=8.3e-28) 28 6.9
SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_39738| Best HMM Match : PAN (HMM E-Value=0.0093) 27 9.1
SB_16879| Best HMM Match : Stig1 (HMM E-Value=1) 27 9.1
SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_24579| Best HMM Match : rve (HMM E-Value=0.085)
Length = 318
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 241 HMGLLADAGKPTINGLSPDA--PDAYSSCTVDPYCAAQTVQNYMRRFGQDCN 390
H+GLLA P NGL+P A P+ +D + Q Y R+ + N
Sbjct: 70 HLGLLAYRSAPLANGLTPIAIGPENLRPRKIDQEQLLKREQEYRERYSSNYN 121
>SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
Length = 885
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -2
Query: 241 DAEEAARFTLALQTLLASRDSLANAAETHLRHRGEFRDIGETDSGNQQQRTKPD 80
+ ++ T+ +L +RD L L+HR R E D +QQ + P+
Sbjct: 716 EVDKGMDITILQSRILGARDKLQEYQALKLKHRDTVRQRDELDDVIRQQASDPE 769
>SB_11718| Best HMM Match : NHL (HMM E-Value=1.5e-12)
Length = 85
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 358 NYMRRFGQDCNGDGVVNCYDYMAIHKKG 441
N++ FG NG G NC ++AI+ KG
Sbjct: 50 NHVTSFGSLGNGRGQFNCPSHVAINSKG 77
>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 361 YMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVF 489
+++ G + +GDG ++ + +AI GY +L N ++VF
Sbjct: 923 FVKEIGSEGSGDGQLSFPESVAIMPNSGYIVVSDLSNNRIHVF 965
>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1421
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 139 EFRDIGETDSGNQQQRTKPDHSRSHCVENTQQKNYNI 29
+FR + + NQ+Q+TK D + HC E +NI
Sbjct: 236 QFRSLQQKSELNQRQQTKSD--KKHCQEAVDGLGFNI 270
>SB_25357| Best HMM Match : Homeobox (HMM E-Value=8.3e-28)
Length = 317
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 133 RDIGETDSGNQQQRTKPDHSRSHCVENTQQ 44
R+ T NQQQ++KP RS + QQ
Sbjct: 112 REASNTSPSNQQQKSKPRRKRSRAAFSHQQ 141
>SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = -2
Query: 241 DAEEAARFTLALQTLLASRDSLANAAETHLRHRGEFRDIGETDSGNQQQRTK 86
D + R + LA D + AAE+ L +D ETD QQ K
Sbjct: 479 DTKVRERLLRESKLTLAKTDEICRAAESMLAQMKIVKDTSETDVNAMQQEVK 530
>SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 343 AQTVQNYMRRFGQDCNGDGVVNCYD 417
A T Q Y F DCN G ++C D
Sbjct: 73 ASTCQGYRCIFDSDCNNGGYLSCCD 97
>SB_39738| Best HMM Match : PAN (HMM E-Value=0.0093)
Length = 70
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 91 TKPDHSRSHCVENTQQKNYNIKK*CAC 11
T P + C+ENTQ +YN+K C
Sbjct: 15 TSPVWCGAQCLENTQCASYNVKNGVTC 41
>SB_16879| Best HMM Match : Stig1 (HMM E-Value=1)
Length = 232
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 343 AQTVQNYMRRFGQDCNGDGVVNCYD 417
A T Q Y F DCN G ++C D
Sbjct: 73 ASTCQGYRCIFDSDCNNGGYLSCCD 97
>SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 606
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 91 TKPDHSRSHCVENTQQKNYNIKK*CAC 11
T P + C+ENTQ +YN+K C
Sbjct: 338 TSPVWCGAQCLENTQCASYNVKNGVTC 364
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,239,696
Number of Sequences: 59808
Number of extensions: 454202
Number of successful extensions: 1427
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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