Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0139
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41547-6|AAA83197.1| 139|Caenorhabditis elegans Hypothetical pr... 47 9e-06
AF067611-3|AAC19179.1| 139|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF067611-4|AAC19181.1| 139|Caenorhabditis elegans Hypothetical ... 40 0.002
AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical ... 33 0.16
U58747-4|AAF99902.2| 159|Caenorhabditis elegans Hypothetical pr... 30 1.5
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 29 2.0
Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical pr... 28 6.1
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 6.1
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 6.1
AF039050-5|AAC47938.1| 499|Caenorhabditis elegans Cytochrome p4... 28 6.1
>U41547-6|AAA83197.1| 139|Caenorhabditis elegans Hypothetical
protein F22A3.6a protein.
Length = 139
Score = 47.2 bits (107), Expect = 9e-06
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +1
Query: 244 MGLLADAGKPTIN-GLSPDAPDAYSSCTVDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDY 420
+G D G+PT G + +A A+ C D CA V+NY R+ CNG G+ C
Sbjct: 52 IGYYEDCGQPTKKAGETTEA--AWKRCADDLNCATTCVENYYNRYKSQCNGLGMGACQIM 109
Query: 421 MAIHKKGGYGCTGELPFNYVNVFNQCINVS 510
H G GC Y N C S
Sbjct: 110 SRNHNGGPRGCHNANTLAYWNGVKSCCGCS 139
Score = 31.1 bits (67), Expect = 0.65
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +2
Query: 146 VTEVCLGCICQAISGCKQGLQCEGE----TCGLFRITWGYW 256
V+ CL CIC SGCK + C + +CG ++I GY+
Sbjct: 16 VSADCLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIGYY 55
>AF067611-3|AAC19179.1| 139|Caenorhabditis elegans Hypothetical
protein C45G7.3 protein.
Length = 139
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = +1
Query: 259 DAGKPTI-NGLSPDAPDAYSSCTVDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHK 435
D G+PT +G + +A A+ C D CA V+NY R+ C G G C H
Sbjct: 57 DCGQPTKKSGETTEA--AWKRCANDLSCATTCVENYYNRYKSQCAGTGQGACEVMARNHN 114
Query: 436 KGGYGCTGELPFNYVNVFNQCINVS 510
G GC Y N C S
Sbjct: 115 GGPQGCKHSGTLGYWNGIKSCCGCS 139
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +2
Query: 158 CLGCICQAISGCKQ---GLQCEGETCGLFRITWGYW 256
CL CIC SGCK + +CG ++I Y+
Sbjct: 20 CLHCICMRESGCKPIGCNMDVGSLSCGYYQIKLPYY 55
>AF067611-4|AAC19181.1| 139|Caenorhabditis elegans Hypothetical
protein C45G7.2 protein.
Length = 139
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = +1
Query: 259 DAGKP-TINGLSPDAPDAYSSCTVDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHK 435
D G+P +G S + A+ C D CA V+NY R+ +C G G C H
Sbjct: 57 DCGQPGKKHGESTEV--AWKRCADDLKCATNCVENYYNRYKHECAGTGQGACEVMARNHN 114
Query: 436 KGGYGCTGELPFNYVNVFNQCINVS 510
G GC Y + C S
Sbjct: 115 GGPRGCHASGTLGYWKGVHSCCGCS 139
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +2
Query: 158 CLGCICQAISGCKQGLQCEGE----TCGLFRITWGYW 256
CL CIC SGCK + C + +CG ++I Y+
Sbjct: 20 CLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIPYY 55
>AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical
protein C45G7.1 protein.
Length = 145
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +1
Query: 259 DAGKPTINGLSPDAPDAYSSCTVDPYCAAQTVQNYMRRFGQDCNGDGVVNC 411
D G+P A+ C D CA + NY R+ CNG G+ C
Sbjct: 39 DCGEPG-KQRGESTESAWKRCADDLDCAETCMMNYYHRYKSQCNGLGMSEC 88
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +1
Query: 337 CAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 498
C A + QNY R+ C+G G+ C + H G GC Y +C
Sbjct: 88 CEA-SFQNYYHRYKSQCDGLGMGECEVFARNHNGGPTGCRNPGTLEYWQSIQKC 140
>U58747-4|AAF99902.2| 159|Caenorhabditis elegans Hypothetical
protein C55F2.2 protein.
Length = 159
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 304 DAYSSCTVDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGC 453
+A+ +C D C+A ++ +F C G C IH G GC
Sbjct: 83 EAWMNCAQDYQCSASCIRTLATKFRVKCYGKS--ECETIARIHDGGANGC 130
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/77 (32%), Positives = 31/77 (40%)
Frame = +2
Query: 272 PLSMVSHLTLRMPTLAALWTRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATG 451
PL+ + + +PT + T P PSKTT T T TA TT ST T
Sbjct: 365 PLTTTTEVISDVPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQ 422
Query: 452 APANFLLTM*TCLTSAS 502
P T T+AS
Sbjct: 423 KPTTVTSTTTLPSTTAS 439
>Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical
protein R06B9.2 protein.
Length = 258
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 329 TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANF 466
T+T + S+T + TATA TA+ WR T + A P +
Sbjct: 57 TKTNSKGESETKTHTVHYTATAKHLDTAVPLWRKTDKAARLLPGKY 102
>Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical
protein C14B1.5 protein.
Length = 396
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +1
Query: 310 YSSCTVDPYCAAQTVQNYMRRFGQDC-----NGDGVVNCYDYMAIH 432
Y +C VD Y A + + +G C N DG+ Y ++ IH
Sbjct: 86 YGACCVDDYTAKSMGCDLLVHYGHSCLVPIQNTDGIAMLYVFVNIH 131
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 140 PPVTEVCLGCICQAISGCKQGLQCEGETCGLFRITWGYWLMPENPLSMVSHLTLRMPTLA 319
P EV G C A + C +G CE GL R GY + N +++ T +M +A
Sbjct: 829 PRKLEVVPGASCNANTVCTKGSTCES---GLCRCQPGYIAVSGNCVALPMSTTPKMRVIA 885
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 140 PPVTEVCLGCICQAISGCKQGLQCEGETCGLFRITWGYWLMPENPLSMVSHLTLRMPTLA 319
P EV G C A + C +G CE GL R GY + N +++ T +M +A
Sbjct: 926 PRKLEVVPGASCNANTVCTKGSTCES---GLCRCQPGYIAVSGNCVALPMSTTPKMRVIA 982
>AF039050-5|AAC47938.1| 499|Caenorhabditis elegans Cytochrome p450
family protein 34A8 protein.
Length = 499
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -3
Query: 192 HPEIAWQMQPRHTSVTGGS---SETSAKQTPATNSN 94
HPE+ +++ T VTGG+ S T +TP N+N
Sbjct: 327 HPEVVEKLRKELTEVTGGTRGVSLTDRTKTPYLNAN 362
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,414,318
Number of Sequences: 27780
Number of extensions: 320477
Number of successful extensions: 887
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -