Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0139
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58227.1 68414.m06616 hypothetical protein                          30   1.1  
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /...    29   1.9  
At1g60360.1 68414.m06796 zinc finger (C3HC4-type RING finger) fa...    28   5.7  
At1g42470.1 68414.m04897 patched family protein similar to SP|O1...    28   5.7  
At4g30110.1 68417.m04281 ATPase E1-E2 type family protein / halo...    27   9.9  
At3g07490.1 68416.m00893 calcium-binding protein, putative simil...    27   9.9  
At1g29340.1 68414.m03587 armadillo/beta-catenin repeat family pr...    27   9.9  
At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identic...    27   9.9  
At1g20800.1 68414.m02605 F-box family protein contains Pfam:PF00...    27   9.9  
At1g09050.1 68414.m01009 expressed protein                             27   9.9  

>At1g58227.1 68414.m06616 hypothetical protein
          Length = 1323

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 391 GDGVVNCYDYMAIHKKGGYGCTGELPFNYV--NVFNQCINV 507
           GDG +  + +M+ + KG +   G+   +YV  N+  QC+NV
Sbjct: 486 GDGKMGIFSFMSKNGKGCFAALGKDGLSYVSLNLKRQCVNV 526


>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 444

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 238 HHMGLLADAGKPTINGLSPDAPDAYSSCTVDPY 336
           HH+ +LA    P  +G+ PD+  +Y+ C  D Y
Sbjct: 214 HHVTILAPQDSPNTDGIDPDS--SYNVCIEDSY 244


>At1g60360.1 68414.m06796 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 327

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 27/92 (29%), Positives = 37/92 (40%)
 Frame = -2

Query: 328 PQCS*SRHPERQVRDH**WVFRHQPVAPCDAEEAARFTLALQTLLASRDSLANAAETHLR 149
           P+C      E + R    + F H    P DA   AR   AL  +          A+  LR
Sbjct: 46  PRCLRQFVVEIETRQRPRFTFNHA-TPPFDASPEARLLEALSLMFEPATIGRFGADPFLR 104

Query: 148 HRGEFRDIGETDSGNQQQRTKPDHSRSHCVEN 53
            R   R+I E +S     R +P H R H ++N
Sbjct: 105 ARS--RNILEPES-----RPRPQHRRRHSLDN 129


>At1g42470.1 68414.m04897 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (GB:AAB63982) (GI:2276463); contains Pfam
           profile PF02460 Patched family
          Length = 1272

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 124 GETDSGNQQQRTKPDHSRSHCVENTQQKNY 35
           GE +S NQQ   KPD  +S  ++NT Q+N+
Sbjct: 297 GERNSVNQQ---KPDTIQSQMLQNTPQRNW 323


>At4g30110.1 68417.m04281 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985]
          Length = 951

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 94  RTKPDHSRSHCVENTQQKNYNIKK*CACA 8
           +   DHS S C E  Q+ N  + K   CA
Sbjct: 758 KASSDHSHSGCCETKQKDNVTVVKKSCCA 786


>At3g07490.1 68416.m00893 calcium-binding protein, putative similar
           to calcium-binding protein GI:6580549 from [Lotus
           japonicus]
          Length = 153

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 346 QTVQNYMRRFGQ-DCNGDGVVNCYDYMAIHKKGGYGCTG 459
           +T+++  R   + D +GDG+VN  ++  + K GG+   G
Sbjct: 112 RTLEDCKRMISKVDVDGDGMVNFKEFKQMMKGGGFAALG 150


>At1g29340.1 68414.m03587 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 729

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 614 LALMETMTDYHKAVVSYSXFVRFSIRQSYLRSVLRE 507
           +AL++T+      VVS    VRFS ++   RS++R+
Sbjct: 30  VALVQTLASISSEVVSCFTSVRFSFQRKNARSLIRK 65


>At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identical
           to wall-associated kinase 2 [Arabidopsis thaliana]
           GI:4826399; induced by salicylic acid or INA
           (PMID:10380805)
          Length = 732

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 146 VTEVCLGCICQAISGCKQGLQCEGETCGLFRITWGYWLMPENPLSMVSHLTLRM 307
           V +   GCI    S   +   C GE C    +  GY  +   P S  +H T+ +
Sbjct: 136 VEKYSTGCISICDSATTKNGSCSGEGCCQIPVPRGYSFVRVKPHSFHNHPTVHL 189


>At1g20800.1 68414.m02605 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 492

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 379 QDCNGDGVVNCYDYMA 426
           +DCN DGV++ YD+ A
Sbjct: 47  KDCNDDGVIHGYDFKA 62


>At1g09050.1 68414.m01009 expressed protein
          Length = 916

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 229 PLPHHMGLLADAGKPTINGLSPDAPDAYSSCTVDP 333
           PL  HM L +D  K T  GLS    +   +  ++P
Sbjct: 658 PLVEHMNLKSDQSKKTGTGLSSSLVEIQETTAIEP 692


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,647,278
Number of Sequences: 28952
Number of extensions: 296615
Number of successful extensions: 864
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)