Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0138
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 748 REHGLSVFGPAVRISRMA 695
           REH  + F P+ RISR+A
Sbjct: 400 REHDPAKFPPSFRISRVA 417


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 90  SSRWGLRGGCPAILPSYPGRESQPAQLQ 7
           SSR  ++ GCP  L ++P  ++Q   LQ
Sbjct: 121 SSRLTIKAGCPMNLENFP-MDTQRCPLQ 147


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 66  HLEDPNEKIPESDPNDKTPTAGLRSEKIVPIRAEPKLFDSY 188
           H  D ++    +D N  + T  +  + + PI++EP   D+Y
Sbjct: 226 HESDNSDYSHTTDENRHSSTLDIDHKMLTPIKSEP--IDAY 264



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 79  PTRRSLNRILMTRPQPLACVRRK*SPFARNLNFSIATTMDAVT 207
           PT+R++++I   +P+P     +    +   LN ++ T + A T
Sbjct: 27  PTQRTMSKIQWRKPKPAMVEEKTQLRYLEELN-ALRTELGAST 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,905
Number of Sequences: 438
Number of extensions: 6092
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)