Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0137
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    27   2.5  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    27   3.3  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    26   4.4  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.4  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    26   4.4  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    26   5.8  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   7.6  

>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 646 ESCSHCSTSAKTWSRLF 596
           E+C  C T AKTW + F
Sbjct: 210 EACKSCYTQAKTWEKKF 226


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 232 MEDYTSSGMLVLPDSSHCQVTISAPLHKAGKVSHYPAT 119
           ++ YT  G+L LP S H  V  +A      K+ H+P T
Sbjct: 72  LKRYTFMGLLTLPTSEH-DVYFNATRVLVYKLKHHPET 108


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 62  KTLHASETILLNLYKWPKSRGRIM*NFTS 148
           K     E +LLNL+K P + G ++ NF S
Sbjct: 207 KKTELEEIMLLNLHKQPWAHGLLLENFNS 235


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -2

Query: 585 CRAFSRLATALRFCRVCNQPKGHGYTRSSSLW 490
           C   S++  A ++C+ C    G  Y     LW
Sbjct: 184 CMICSKVQPAAQYCKYCKNCMGRYYCNKCKLW 215


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -1

Query: 196 PDSSH-CQVTI-SAPLHKAGKVSHYPATALGPFVQV 95
           PD +H C +T+  +PL+KAG++  Y  TA    ++V
Sbjct: 196 PDITHQCLLTLLDSPLNKAGRLQVYIHTAKKVLIEV 231


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +3

Query: 249 LEAEFMSPSGRVPFIKCGAFVVSELEP---IVQFAANKGVTLCAQLS 380
           +EA  +SP GR+     G ++ S+++P   IV+FA ++   +  QL+
Sbjct: 85  VEATAVSPEGRISPNDSGLWMESQMKPLRRIVEFAHSQNQKIGIQLA 131


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 142 YQPYEVEQILLPDNASCLAVQAFLKMCNLPF 234
           Y  Y   QILL D    + + AFLK  + PF
Sbjct: 382 YDDYTTNQILLEDYMPGIPLSAFLKHKSGPF 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,603
Number of Sequences: 5004
Number of extensions: 59410
Number of successful extensions: 203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)