Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0137
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0481 + 3427723-3427906,3428856-3429196,3429286-3429362,342... 29 2.6
12_01_0685 + 5848758-5849162,5849282-5849341,5849803-5849919,585... 29 3.4
03_02_0610 + 9834083-9834368,9834495-9834556,9834695-9834787,983... 29 3.4
01_07_0299 + 42594363-42594424,42594516-42594798,42595185-425954... 29 3.4
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 29 4.5
01_03_0003 + 11509530-11512772 29 4.5
08_02_0199 - 14160881-14161054,14161151-14161306,14161802-141619... 28 6.0
06_01_0082 + 656362-657798 28 6.0
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 28 6.0
11_06_0311 - 22279202-22279690,22279976-22280103,22281249-222813... 28 7.9
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 28 7.9
03_01_0312 + 2469096-2470862 28 7.9
>06_01_0481 +
3427723-3427906,3428856-3429196,3429286-3429362,
3429509-3429569,3429852-3430023,3430600-3430616
Length = 283
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 187 SCLAVQAFLKMCNLPFEVEM 246
+CL V +L+MCN+PF++ +
Sbjct: 35 TCLPVLLYLRMCNVPFDIHV 54
>12_01_0685 +
5848758-5849162,5849282-5849341,5849803-5849919,
5850013-5850110,5850470-5851020,5851118-5851221,
5851298-5851387
Length = 474
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -1
Query: 295 LMKGTRPDGDINSASSASPLRMEDYTSSGMLVLPDSSHCQVTISAPLHKAGKVSHYP 125
L+ +RP GD N A + T G P SSHCQ + + + KV+ +P
Sbjct: 233 LVDPSRP-GDFNQAMMELGATLCSKTKPGCSQCPVSSHCQALALSSQNASVKVTDFP 288
>03_02_0610 +
9834083-9834368,9834495-9834556,9834695-9834787,
9835689-9835805,9835972-9836055,9836198-9836293,
9836368-9836445,9836548-9836637,9836733-9836800,
9836940-9837021,9838203-9838289
Length = 380
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 43 GINILNKNVACVGDNITKLVQMAQEP 120
G+N+L +N+ DN+T+ + +A+EP
Sbjct: 237 GLNVLAENIQDDKDNVTRFMMLAREP 262
>01_07_0299 +
42594363-42594424,42594516-42594798,42595185-42595409,
42596395-42596592,42596871-42597325,42597824-42597962,
42598035-42598113,42598686-42598924,42599058-42599362,
42599449-42599560,42599640-42599804,42599933-42600071,
42600111-42600219,42600733-42600823,42600940-42601064,
42601148-42601297,42601383-42601455,42601630-42601810,
42601888-42602046,42602939-42603085,42603176-42603220,
42603305-42603382,42603565-42603719,42603875-42603927,
42604012-42604090,42604271-42604357
Length = 1310
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 323 GAYRSVCREQRCHIVCSTFYGGESRDES 406
G YR V R H FYGGE+R+ S
Sbjct: 285 GEYRQVHSRLRTHAESVAFYGGENREAS 312
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 603 GSSRAQCRAFSRLATALRFCRVCNQPKGHGYTRSSSLWSPRCTC 472
GSS + R+ L C QP+G YTR S+ S C
Sbjct: 323 GSSPGHYNSPGRIMELLESAAFCVQPRGDSYTRKSTFDSMLAGC 366
>01_03_0003 + 11509530-11512772
Length = 1080
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +3
Query: 309 VVSELEPIVQFAANKGVTLCAQLSTEEKAEMRAYMSLITNVLVNAELYISWLDNDTYNAV 488
V +LE I+ + K V A+ +T E A+++ ++ V + LD D + +
Sbjct: 77 VAYDLEDIIDELSYKTVQPEAETNTHEHADLKRKFEVLDTVNSPVHDHEESLDTDMLDKI 136
Query: 489 TRVRN 503
++VRN
Sbjct: 137 SKVRN 141
>08_02_0199 -
14160881-14161054,14161151-14161306,14161802-14161921,
14162046-14162143,14162969-14163041,14164472-14164619,
14165108-14165232,14165611-14165652,14165757-14166074,
14166633-14167559,14167584-14167852,14167946-14168255,
14169281-14169465,14170795-14170901,14171320-14171486
Length = 1072
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 279 RVPFIKCGAFVVSELEPIVQFAANKGVTLCAQLSTEEKA 395
RVP G+ V+ + E +V N G ++ Q +++EKA
Sbjct: 817 RVPLHNGGSLVIEQTEALVSIDVNGGHSMFGQGTSQEKA 855
>06_01_0082 + 656362-657798
Length = 478
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = -1
Query: 298 HLMKGTRPDGDINSAS----SASPLRMEDYTSSGMLVLPDSSHCQVTISAPLHKAGKVSH 131
H + R D D AS + S L +D + L+LPDS H Q ++PL + H
Sbjct: 41 HARRAARLDPDSTRASLLLTAVSVLAADDSSHRATLLLPDSPHSQ---ASPLSPSALRRH 97
Query: 130 Y 128
Y
Sbjct: 98 Y 98
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 564 ATALRFCRVCNQPKGHGYTRS--SSLWSPRC 478
+T LR C C P G G S S+W P+C
Sbjct: 172 STGLRVCAGCKTPIGQGRFLSCMDSVWHPQC 202
>11_06_0311 -
22279202-22279690,22279976-22280103,22281249-22281355,
22282799-22282888,22283590-22283660
Length = 294
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 328 GSNSDTTKAPHLMKGTRPD-GDINSASSASPLRMEDYTSSG 209
GSNS T PH + G P+ ++ ++ SPL + + S+G
Sbjct: 182 GSNSATQPVPHHIWGNGPNLAMVHPTNTLSPLHNQHHQSAG 222
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/98 (21%), Positives = 41/98 (41%)
Frame = +3
Query: 225 SSIRSGDALEAEFMSPSGRVPFIKCGAFVVSELEPIVQFAANKGVTLCAQLSTEEKAEMR 404
SSI +G L SP GRV ++ V +V G+ L + K ++
Sbjct: 2 SSIGTGYDLSVTTFSPDGRVFQVEYAGKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMILK 61
Query: 405 AYMSLITNVLVNAELYISWLDNDTYNAVTRVRNSSCTH 518
+ +V ++ L ++ L D V+R ++ + ++
Sbjct: 62 GSNRRLHSVHRHSGLAVAGLAADGRQIVSRAKSEAASY 99
>03_01_0312 + 2469096-2470862
Length = 588
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -2
Query: 675 KSLSPKSLTQRVAATVRRQLRPGRGSSRAQCRAFSRLATALRFCRVCNQPKGHGYTRSSS 496
KS+ + + Q ++V + L G S+ C + S + + C QP+G YTR S+
Sbjct: 356 KSIRSQLIDQCRTSSVCKLLECDLGESK--CHSPSAIMNMFQNSLFCLQPQGDSYTRRSA 413
Query: 495 LWSPRCTC 472
S C
Sbjct: 414 FDSMLAGC 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,675,385
Number of Sequences: 37544
Number of extensions: 401520
Number of successful extensions: 1104
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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