Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0137
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46139| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_24803| Best HMM Match : LRR_1 (HMM E-Value=0.0066)                  29   3.5  
SB_12308| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   3.5  
SB_52166| Best HMM Match : Exo_endo_phos (HMM E-Value=5.6e-10)         29   3.5  
SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_18909| Best HMM Match : RVT_1 (HMM E-Value=1.2e-28)                 29   3.5  
SB_46116| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_12446| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)               28   6.0  
SB_36978| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_5166| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_46139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 11  LIFSMMKNLLSASIF*IKTLHASETILLNLYKWPKSRGRIM*NFTSLMKWSRYCYLTMRA 190
           L+F +  N +++ I     L A +TIL  L + P+S   I  +   L KWS+   ++  A
Sbjct: 241 LMFLLFINDINSGITSRIRLFADDTILYGLIEGPQSAAVIQKDLDLLFKWSKTWQMSFNA 300


>SB_24803| Best HMM Match : LRR_1 (HMM E-Value=0.0066)
          Length = 727

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 11  LIFSMMKNLLSASIF*IKTLHASETILLNLYKWPKSRGRIM*NFTSLMKWSRYCYLTMRA 190
           L+F +  N +++ I     L A +TIL  L + P+S   I  +   L KWS+   ++  A
Sbjct: 98  LMFLLFINDINSGITSRIRLFADDTILYGLIEGPQSAAVIQKDLDLLFKWSKTWQMSFNA 157


>SB_12308| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 907

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 11  LIFSMMKNLLSASIF*IKTLHASETILLNLYKWPKSRGRIM*NFTSLMKWSRYCYLTMRA 190
           L+F +  N +++ I     L A +TIL  L + P+S   I  +   L KWS+   ++  A
Sbjct: 726 LMFLLFINDINSGITSRIRLFADDTILYGLIEGPQSAAVIQKDLDLLFKWSKTWQMSFNA 785


>SB_52166| Best HMM Match : Exo_endo_phos (HMM E-Value=5.6e-10)
          Length = 805

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 11  LIFSMMKNLLSASIF*IKTLHASETILLNLYKWPKSRGRIM*NFTSLMKWSRYCYLTMRA 190
           L+F +  N +++ I     L A +TIL  L + P+S   I  +   L KWS+   ++  A
Sbjct: 624 LMFLLFINDINSGITSRIRLFADDTILYGLIEGPQSAAVIQKDLDLLFKWSKTWQMSFNA 683


>SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1230

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 11   LIFSMMKNLLSASIF*IKTLHASETILLNLYKWPKSRGRIM*NFTSLMKWSRYCYLTMRA 190
            L+F +  N +++ I     L A +TIL  L + P+S   I  +   L KWS+   ++  A
Sbjct: 1095 LMFLLFINDINSGITSRIRLFADDTILYGLIEGPQSAAVIQKDLDLLFKWSKTWQMSFNA 1154


>SB_18909| Best HMM Match : RVT_1 (HMM E-Value=1.2e-28)
          Length = 591

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 11  LIFSMMKNLLSASIF*IKTLHASETILLNLYKWPKSRGRIM*NFTSLMKWSRYCYLTMRA 190
           L+F +  N +++ I     L A +TIL  L + P+S   I  +   L KWS+   ++  A
Sbjct: 215 LMFLLFINDINSGITSRIRLFADDTILYGLIEGPQSAAVIQKDLDLLFKWSKTWQMSFNA 274


>SB_46116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 252 EAEFMSPSGRVPFIKCGAFVVSELEPIVQFAANK-GVTLCAQLSTEEKAEMRAYMSLITN 428
           E++  S   +VPFI+     V +    +++   K  V   A LS E+KA   A  ++   
Sbjct: 76  ESKLGSSKEKVPFIEYQGDKVQDTNFCIKYLNKKFNVDPDAHLSAEQKAMCHAIQAMAEE 135

Query: 429 VLVNAELYISWLDN 470
               +  Y  W+DN
Sbjct: 136 NTYWSLAYYRWVDN 149


>SB_12446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 252 EAEFMSPSGRVPFIKCGAFVVSELEPIVQFAANK-GVTLCAQLSTEEKAEMRAYMSLITN 428
           E++  S   +VPFI+     V +    +++   K  V   A LS E+KA   A  ++   
Sbjct: 312 ESKLGSSKEKVPFIEYQGDKVQDTNFCIKYLNKKFNVDPDAHLSAEQKAMCHAIQAMAEE 371

Query: 429 VLVNAELYISWLDN 470
               +  Y  W+DN
Sbjct: 372 NTYWSLAYYRWVDN 385


>SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)
          Length = 1085

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 118 PWPDNVKLYQPYEVEQILLP 177
           PW +N   Y+P E +Q+LLP
Sbjct: 283 PWNNNNNYYRPLEQQQLLLP 302



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 118 PWPDNVKLYQPYEVEQILLP 177
           PW +N   Y+P E +Q+LLP
Sbjct: 554 PWNNNNNYYRPLEQQQLLLP 573



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 118 PWPDNVKLYQPYEVEQILLP 177
           PW +N   Y+P E +Q+LLP
Sbjct: 764 PWNNNNNYYRPLEQQQLLLP 783



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 118 PWPDNVKLYQPYEVEQILLP 177
           PW +N   Y+P E +Q+LLP
Sbjct: 825 PWNNNNNYYRPLEQQQLLLP 844


>SB_36978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = -2

Query: 552 RFCRVCNQPKGHGYTRSSSLWSPRCTCHYPTMKCRAQH 439
           R C     P G    R +  W+ RC C  P   CR  H
Sbjct: 118 RLCIEFGLPPGLPMERRAEPWARRCVCVLPGEGCRNVH 155


>SB_5166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 198 STSIPEDV*SSIRSGDALEAEFMSPSGRVPFIKCGAF-VVSELEPIVQFAANKGVT 362
           S+  P    +SI SGD L+   +SPSG+    K  A   +  +  ++Q+  N  +T
Sbjct: 653 SSESPYSSFTSISSGDKLDVIQLSPSGKSLLHKAAAAGDLESIHTLIQYGGNVNLT 708


>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1298

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 417 LITNVLVNAELYIS--WLDNDTYNAVTRVRNSSCT 515
           LITN++  +  Y+   +LD+ + NA  R+ NSS T
Sbjct: 291 LITNIISMSNPYLQCIYLDSPSGNATVRINNSSFT 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,565,181
Number of Sequences: 59808
Number of extensions: 475955
Number of successful extensions: 1294
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)