Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0137
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14714-1|AAA28180.2|  244|Caenorhabditis elegans Temporarily ass...    74   8e-14
DQ298419-1|ABC33802.1|  230|Caenorhabditis elegans metaxin 2 pro...    74   8e-14
L14714-2|AAO12391.1|   55|Caenorhabditis elegans Temporarily ass...    49   3e-06
Z92834-6|CAB07391.1|  312|Caenorhabditis elegans Hypothetical pr...    42   5e-04
AF101305-2|AAF98594.2|  259|Caenorhabditis elegans Uncoordinated...    31   0.57 
AC024859-24|ABD63210.1|  483|Caenorhabditis elegans Hypothetical...    30   1.3  
Z75544-3|CAA99879.1|  212|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U64853-2|AAB04975.2|  529|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>L14714-1|AAA28180.2|  244|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 354, isoform a protein.
          Length = 244

 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 35/95 (36%), Positives = 56/95 (58%)
 Frame = +3

Query: 258 EFMSPSGRVPFIKCGAFVVSELEPIVQFAANKGVTLCAQLSTEEKAEMRAYMSLITNVLV 437
           +F+SP G VP +K    +++    IV F   KGVTL + LS  + A+MRA +S+I ++L 
Sbjct: 52  DFISPDGVVPLLKINKTLITGFNAIVDFVHKKGVTLTSHLSETQVADMRANISMIEHLLT 111

Query: 438 NAELYISWLDNDTYNAVTRVRNSSCTHGP*AGCRP 542
             E ++ W  ++TY+ VT++R  S  H P +   P
Sbjct: 112 TVEKFVLWNHDETYDKVTKLRYGSVYHWPLSSVLP 146



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 24/47 (51%), Positives = 30/47 (63%)
 Frame = +1

Query: 109 AQEPWPDNVKLYQPYEVEQILLPDNASCLAVQAFLKMCNLPFEVEMR 249
           A + W D V L+ PY  +Q L+ D A CLAVQ FL+M +LPF V  R
Sbjct: 3   AAQDWED-VSLFTPYLNDQALMYDFADCLAVQTFLRMTSLPFNVRQR 48


>DQ298419-1|ABC33802.1|  230|Caenorhabditis elegans metaxin 2
           protein.
          Length = 230

 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 35/95 (36%), Positives = 56/95 (58%)
 Frame = +3

Query: 258 EFMSPSGRVPFIKCGAFVVSELEPIVQFAANKGVTLCAQLSTEEKAEMRAYMSLITNVLV 437
           +F+SP G VP +K    +++    IV F   KGVTL + LS  + A+MRA +S+I ++L 
Sbjct: 68  DFISPDGVVPLLKINKTLITGFNAIVDFVHKKGVTLTSHLSETQVADMRANISMIEHLLT 127

Query: 438 NAELYISWLDNDTYNAVTRVRNSSCTHGP*AGCRP 542
             E ++ W  ++TY+ VT++R  S  H P +   P
Sbjct: 128 TVEKFVLWNHDETYDKVTKLRYGSVYHWPLSSVLP 162



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = +1

Query: 88  ITKLVQM-AQEPWPDNVKLYQPYEVEQILLPDNASCLAVQAFLKMCNLPFEVEMR 249
           +T  + M A + W D V L+ PY  +Q L+ D A CLAVQ FL+M +LPF V  R
Sbjct: 11  VTDALSMNAAQDWED-VSLFTPYLNDQALMYDFADCLAVQTFLRMTSLPFNVRQR 64


>L14714-2|AAO12391.1|   55|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 354, isoform b protein.
          Length = 55

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 24/47 (51%), Positives = 30/47 (63%)
 Frame = +1

Query: 109 AQEPWPDNVKLYQPYEVEQILLPDNASCLAVQAFLKMCNLPFEVEMR 249
           A + W D V L+ PY  +Q L+ D A CLAVQ FL+M +LPF V  R
Sbjct: 3   AAQDWED-VSLFTPYLNDQALMYDFADCLAVQTFLRMTSLPFNVRQR 48


>Z92834-6|CAB07391.1|  312|Caenorhabditis elegans Hypothetical
           protein F39B2.11 protein.
          Length = 312

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
 Frame = +3

Query: 267 SPSGRVPFI---KCGAFVVSELEPIVQFAANKG--VTLCAQLSTEEKAEMRAYMSLITNV 431
           SPSG +P +   +  A  V++ E  V      G  V + A L+T EKA++ A+   + + 
Sbjct: 44  SPSGELPMVAQTEGEAKPVTDFEKFVDILKKCGQDVVIDADLTTIEKAQLDAFSCYLHHN 103

Query: 432 LVNAELYISWLDNDTYNAVTRVRNSSCTHGP 524
           L  A ++  W D   YN VT+   +S  H P
Sbjct: 104 LYPAVMHTFWTDELNYNTVTQYWYASHLHFP 134


>AF101305-2|AAF98594.2|  259|Caenorhabditis elegans Uncoordinated
           protein 46 protein.
          Length = 259

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +1

Query: 241 EMRWKLNLCLHQDASPSSSAVLLSYPNWSLSFSLPRTKVSHC 366
           E+RW+LN  ++++    SSAV  S  N S+ FS P T+   C
Sbjct: 121 ELRWQLNKVIYEEKFAGSSAVFES-DNSSVIFSAPLTQKYVC 161


>AC024859-24|ABD63210.1|  483|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.3 protein.
          Length = 483

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
 Frame = +3

Query: 228 SIRSGDALEAEFMSPSGRVPFIKCGAFVVSELEPIVQFAANK-GVTLCAQLSTEEKAEMR 404
           +I++       F   SGR+   K          P++Q  A++  V +C     EE A  +
Sbjct: 139 TIKASTLCSPTFADNSGRIFMCKVNVEPFGTSGPLIQKTAHRLAVDVCKIEKLEEFAA-K 197

Query: 405 AYMSLIT---NVLVNAELYI---SWLDNDTYNAVTRVRNSSCTHGP*AGCRPDRN 551
           A+  +I      L+ +E YI     L +D + A T+  +  C     A C PDR+
Sbjct: 198 AFPKIICARCKQLILSEEYIMTIQCLPDDDFLATTQSADFFCRDSCGASCDPDRH 252


>Z75544-3|CAA99879.1|  212|Caenorhabditis elegans Hypothetical
           protein K02A11.2 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 401 HLGFLLRRKLSTQCDTFVRGKL----NDRLQFGYDKSTALDEGDAS*WRH 264
           H  FLL  +   Q  TF+ GK+    ++  Q+   K  A DEG    W+H
Sbjct: 115 HFAFLLAGENRDQAQTFLHGKIAYEHSNAFQWAMKKRLAFDEGC---WKH 161


>U64853-2|AAB04975.2|  529|Caenorhabditis elegans Hypothetical
           protein K11G9.2 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/85 (22%), Positives = 38/85 (44%)
 Frame = +1

Query: 124 PDNVKLYQPYEVEQILLPDNASCLAVQAFLKMCNLPFEVEMRWKLNLCLHQDASPSSSAV 303
           P +  LY+  ++    +PD A+CL++  F       +E++   K  + +         + 
Sbjct: 77  PPSGMLYENLQLPNTDIPDEANCLSLNVFCPQ----WEIKQSAKHPVMIFIHGGGFELSA 132

Query: 304 LLSYPNWSLSFSLPRTKVSHCVLNF 378
              Y ++SLS +LP   V    +N+
Sbjct: 133 SKDYCDYSLSGTLPLKDVIVVTVNY 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,758,230
Number of Sequences: 27780
Number of extensions: 339435
Number of successful extensions: 1027
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)