Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0137
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.2  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 291 IKCGAFVVSELEPIVQFAANKGVTLCAQLSTEEK 392
           IKCG F+ S    IV  A  KG  + A++   EK
Sbjct: 67  IKCGTFLGSGGFGIVYKALYKGEQVAAKIIQTEK 100


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 215 FRNACTARQLALSGNNICS 159
           FRN    ++L LSGN + S
Sbjct: 427 FRNCSDLKELDLSGNELTS 445


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 274  DGDINSASSASPLRMEDYTSSGMLVLPDSSHCQVTISAPLH 152
            D  I S+S      ++ YT+  M VL  +S      SAP+H
Sbjct: 1132 DTKITSSSETILHGLKKYTNYSMQVLAFTSGGDGVKSAPIH 1172


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 323 GAYRSVCREQRCHIVCSTFYG 385
           G+   +C  +  H VC  FYG
Sbjct: 111 GSLLHICMLELGHEVCGRFYG 131


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 157 LHKAGKVSHYPATALGPFV 101
           L KAG V+++   AL PF+
Sbjct: 436 LQKAGIVTYFIVRALKPFI 454


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 420 ITNVLVNAELYISWLDNDTY 479
           I++ LVNA+L   +LDN  +
Sbjct: 23  ISDSLVNAKLAFGFLDNSVW 42


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 515 PWPLGWLQTRQKRNAVAKRL 574
           PW  GW   R+  NA  K L
Sbjct: 209 PWYKGWKVERKDGNADGKTL 228


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 472 SLSNHEM*SSALTKTLVMRLIYALISAFSSVES 374
           S+SN +       KT V ++I  ++ A SSV S
Sbjct: 192 SISNIDGAEDHCNKTAVRKVISGVVGAASSVTS 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,878
Number of Sequences: 438
Number of extensions: 4012
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)