Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0137
(679 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) iden... 30 1.6
At4g10845.1 68417.m01766 hypothetical protein 28 4.9
At2g04270.4 68415.m00419 glycoside hydrolase starch-binding doma... 28 4.9
At2g04270.3 68415.m00418 glycoside hydrolase starch-binding doma... 28 4.9
At2g04270.2 68415.m00417 glycoside hydrolase starch-binding doma... 28 4.9
At2g04270.1 68415.m00416 glycoside hydrolase starch-binding doma... 28 4.9
At5g44490.1 68418.m05451 F-box family protein contains F-box dom... 28 6.5
At3g63070.1 68416.m07084 PWWP domain-containing protein putative... 27 8.6
At3g07630.2 68416.m00914 prephenate dehydratase family protein s... 27 8.6
At3g07630.1 68416.m00913 prephenate dehydratase family protein s... 27 8.6
At2g20370.1 68415.m02378 exostosin family protein contains Pfam ... 27 8.6
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 27 8.6
>At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1)
identical to peroxisomal ABC transporter PXA1
GI:15320529 from [Arabidopsis thaliana]; contains Pfam
profile PF00005: ABC transporter;
Length = 1337
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 323 GAYRSVCREQRCHIVCSTFYGGESRDES 406
G YR + R H FYGGE+R+ES
Sbjct: 286 GEYRQLHSRLRTHSESIAFYGGETREES 313
>At4g10845.1 68417.m01766 hypothetical protein
Length = 164
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 658 IFDSESCSHCSTSAKTWSRLFSCPMQSLQPLSYSI-TFLSGLQ 533
+ + +S S C+ + + W RLFS S + SY I F+ GL+
Sbjct: 51 LIEDKSLSFCTCNGERWRRLFSFYKVSSRVTSYLIYLFVHGLR 93
>At2g04270.4 68415.m00419 glycoside hydrolase starch-binding
domain-containing protein contains Pfam profile: PF00686
starch binding domain
Length = 713
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 273 SGRVPFIKCGAFVVSELEPIVQFAANKGVTLCAQLSTEEKA 395
S RVP G+ V+ + E +V N G + Q +++EKA
Sbjct: 444 SKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKA 484
>At2g04270.3 68415.m00418 glycoside hydrolase starch-binding
domain-containing protein contains Pfam profile: PF00686
starch binding domain
Length = 619
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 273 SGRVPFIKCGAFVVSELEPIVQFAANKGVTLCAQLSTEEKA 395
S RVP G+ V+ + E +V N G + Q +++EKA
Sbjct: 444 SKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKA 484
>At2g04270.2 68415.m00417 glycoside hydrolase starch-binding
domain-containing protein contains Pfam profile: PF00686
starch binding domain
Length = 871
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 273 SGRVPFIKCGAFVVSELEPIVQFAANKGVTLCAQLSTEEKA 395
S RVP G+ V+ + E +V N G + Q +++EKA
Sbjct: 602 SKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKA 642
>At2g04270.1 68415.m00416 glycoside hydrolase starch-binding
domain-containing protein contains Pfam profile: PF00686
starch binding domain
Length = 996
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 273 SGRVPFIKCGAFVVSELEPIVQFAANKGVTLCAQLSTEEKA 395
S RVP G+ V+ + E +V N G + Q +++EKA
Sbjct: 727 SKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKA 767
>At5g44490.1 68418.m05451 F-box family protein contains F-box domain
Pfam:PF00646
Length = 455
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 214 KMCNLP-FEVEMRWK--LNLCLHQDASPSSSAVLLSYPNWSLSFSLPRTKVSHCVLNFL 381
+ CNL EV++ W +NL + D SP+ +++L +L S+ + V C+L+ L
Sbjct: 302 QFCNLSSLEVKISWSRGINLSMFLDNSPNLKSMVLVIYCKNLEKSVSFSSVPQCLLSSL 360
>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
transcription factor HUA2, Arabidopsis thaliana,
EMBL:AF116556
Length = 1347
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -1
Query: 292 MKGTRPDGDINSASSASPLRMEDYTSSGMLVLPDSSHCQVTISAP 158
M+ P + S++SA + ++ S+ L++P +SH VT S+P
Sbjct: 1087 MEDVAPPWEGGSSASAITDQADNRESANCLLVPGTSHQNVTSSSP 1131
>At3g07630.2 68416.m00914 prephenate dehydratase family protein
similar to P-protein: chorismate mutase, prephenate
dehydratase GB:P43900 [Haemophilus influenzae]
Length = 381
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 43 GINILNKNVACVGDNITKLVQMAQEP 120
G+NI+ K++ DN+T+ + +A+EP
Sbjct: 252 GLNIVAKDIQDDCDNVTRFLMLAREP 277
>At3g07630.1 68416.m00913 prephenate dehydratase family protein
similar to P-protein: chorismate mutase, prephenate
dehydratase GB:P43900 [Haemophilus influenzae]
Length = 381
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 43 GINILNKNVACVGDNITKLVQMAQEP 120
G+NI+ K++ DN+T+ + +A+EP
Sbjct: 252 GLNIVAKDIQDDCDNVTRFLMLAREP 277
>At2g20370.1 68415.m02378 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 619
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = -2
Query: 675 KSLSPKSLTQRVAATVRRQLRPGRGSSRAQCRAFSRLATALRFCRVCNQPKGHGYTRSSS 496
KS+ + + Q + V + L G S+ C A S + + C QP+G YTR S+
Sbjct: 379 KSIRGQIIDQCRNSNVGKLLECDFGESK--CHAPSSIMQMFQSSLFCLQPQGDSYTRRSA 436
Query: 495 LWSPRCTC 472
S C
Sbjct: 437 FDSMLAGC 444
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -2
Query: 552 RFCRVCNQPKGHGYTRS--SSLWSPRC 478
R C CN GHG + +SLW P C
Sbjct: 170 RICAGCNMEIGHGRFLNCLNSLWHPEC 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,929,082
Number of Sequences: 28952
Number of extensions: 314591
Number of successful extensions: 907
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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