Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0136
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0135 + 5674786-5675040,5675179-5675490,5676505-5677010,567...    32   0.28 
05_03_0349 - 12799736-12799954,12803466-12803595,12804124-12804896     31   0.50 
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65...    29   2.7  
04_04_0422 + 25098612-25099025,25099500-25099633,25099817-251000...    29   3.5  
01_06_0684 + 31196825-31197252,31199189-31199291,31199402-311995...    28   4.6  
01_06_0513 - 29944888-29945943                                         28   4.6  
10_08_0215 - 15939842-15940056,15940235-15940913                       28   6.1  

>10_02_0135 +
           5674786-5675040,5675179-5675490,5676505-5677010,
           5677057-5677103,5677457-5677918,5678071-5678294
          Length = 601

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 372 SRDWWHHMPLLRVRSRVLRNGAAAQTPQHH 461
           S +WW  M  +R  +R  RNG     P+HH
Sbjct: 180 SPEWWTRMDHMRRGARAFRNGPLLYIPEHH 209


>05_03_0349 - 12799736-12799954,12803466-12803595,12804124-12804896
          Length = 373

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 350 TIRRQRPFPGLVASYAPTEGQIACSTQW-SGCSDAATS*GWVDLVVGFGR 496
           TIRR RP P L A  +  +G    S  W   C+  A + G +D+VVG  R
Sbjct: 161 TIRRCRPAPKLEAGMSDGDGVHNSSDVWVDHCTVEACADGLIDVVVGSTR 210


>08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-655735,
            656209-656411,656837-657292,657718-657805,657917-658017,
            658404-658631,659128-659445,659528-659812,660148-660711
          Length = 1887

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 368  PFPGLVASYAPTEGQIACSTQWSGCSDAATS*GWVDLVVGFGRNY 502
            P  G+VA++A TE     STQ +  SD       V+ VVG G N+
Sbjct: 1562 PLNGVVAAHAATESLPVLSTQVTELSDGVFIAMSVNHVVGDGTNF 1606


>04_04_0422 +
           25098612-25099025,25099500-25099633,25099817-25100067,
           25100130-25100494
          Length = 387

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 277 AYPAPRNVERPHRQGKTFKEICRVHYPEAAAVPGTG 384
           AY A R  ER H +GK  ++  RVH  +A    G G
Sbjct: 125 AYAAARARERRHEKGKAGRDNLRVHGHQARLEGGPG 160


>01_06_0684 +
           31196825-31197252,31199189-31199291,31199402-31199512,
           31199614-31199697,31199915-31199986,31200073-31200129,
           31200427-31200546,31201301-31201324,31201953-31202063,
           31202165-31202202,31202287-31202443,31202700-31202801,
           31202878-31202934,31203113-31203259,31203429-31203499,
           31203582-31203669,31203810-31203866,31203996-31204193
          Length = 674

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 431 WSGCSDAATS*GWVDLVVGFGRNYG 505
           WSG S AA S GW+D+VV   R +G
Sbjct: 251 WSGLS-AALSVGWLDIVVNMLRFHG 274


>01_06_0513 - 29944888-29945943
          Length = 351

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +2

Query: 317 KERRLKKFAECTIRRQRPFPGLVASYAPTEGQIACSTQWSGCSDAATS*GWVDLVVGFGR 496
           K RR  ++A+      RP P    + AP       + +WS  S  A    W D  V  GR
Sbjct: 61  KRRRTDRYAQGFEFAPRPAPATATATAPAPTPARGTPEWSEGSTFALLDAWGDRFVRAGR 120


>10_08_0215 - 15939842-15940056,15940235-15940913
          Length = 297

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 377 GLVASYAPTEGQIACSTQWSGCSDAATS*GWVDLVVGFGRNYGKVTSVG 523
           G   +Y P+ G  A +T   G   ++   GW     GFG  YG+  + G
Sbjct: 65  GEARAYGPSSGAYASATGGGGGGGSSNGNGW-GSGSGFGSGYGESVASG 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,315,737
Number of Sequences: 37544
Number of extensions: 285320
Number of successful extensions: 719
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)