Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0136
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31004| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_16695| Best HMM Match : MTHFR (HMM E-Value=2.10195e-44)             28   6.3  
SB_46210| Best HMM Match : CMAS (HMM E-Value=2.6e-10)                  27   8.3  

>SB_31004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 165 IASKKGAPSTETSVTSRSAXANVR 94
           IASK+ AP TET+  ++S   N+R
Sbjct: 62  IASKQPAPKTETTTLAKSIGNNIR 85


>SB_16695| Best HMM Match : MTHFR (HMM E-Value=2.10195e-44)
          Length = 543

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 326 RLKKFAECTIRRQRPFPGL 382
           R K+F  C IR QRP PG+
Sbjct: 120 RAKEFGVCGIRAQRPAPGI 138


>SB_46210| Best HMM Match : CMAS (HMM E-Value=2.6e-10)
          Length = 190

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 342 QSALSGGSGRSRDWWHHMPLLRVRSRVLRNGAAAQTPQHHEDGL 473
           + +L  G      WW    L    S+VLR G   Q P H +D L
Sbjct: 53  EGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTL 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,741,236
Number of Sequences: 59808
Number of extensions: 292168
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)