Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0136
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          25   0.41 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.7  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 14/57 (24%), Positives = 22/57 (38%)
 Frame = +2

Query: 389 SYAPTEGQIACSTQWSGCSDAATS*GWVDLVVGFGRNYGKVTSVGSIFCDLLVIEXV 559
           SY P  G ++CS  W        S  ++  +   G      T V S    +L ++ V
Sbjct: 39  SYGPEAGNVSCSVSWEVHDPVTNSDTYIGFLFVLGLIVPVFTIVSSYAAIVLTLKKV 95


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 480 TRSTHPHDVAASEQPLHCVEH 418
           T S+ P D+   E+PL  ++H
Sbjct: 276 TASSTPEDLQDLEEPLTTIQH 296


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = +3

Query: 384 WHHMPLLRVRSRVLRNGAAAQTPQHH 461
           WH   L+R  SR    G       HH
Sbjct: 255 WHQKELVRRDSRRKNYGGVYHLDNHH 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,209
Number of Sequences: 438
Number of extensions: 3072
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)