Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0136
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00450.1 68417.m00062 expressed protein                             29   2.9  
At5g61120.1 68418.m07668 expressed protein                             28   3.9  
At1g28040.1 68414.m03433 zinc finger (C3HC4-type RING finger) fa...    27   6.8  
At1g12440.2 68414.m01438 zinc finger (AN1-like) family protein c...    27   9.0  
At1g12440.1 68414.m01437 zinc finger (AN1-like) family protein c...    27   9.0  

>At4g00450.1 68417.m00062 expressed protein
          Length = 2124

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -3

Query: 446  LSSRSIA*NTRSDPQ*GHMMPPVPGTAAASG*CTLQISLNVFPCLCGLSTFLGAGYAL 273
            L+ RS A  T + P      PP P    AS    LQ  L + P +CG  +F    +AL
Sbjct: 1849 LARRSSANTTDTSP------PPSPAALRASMSLRLQFLLRLLPVICGEPSFKNTRHAL 1900


>At5g61120.1 68418.m07668 expressed protein 
          Length = 326

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 399 LLRVRSRVLRNGAAAQTPQHHEDGLIL 479
           LL  +S  L  G + QTPQH +DG ++
Sbjct: 273 LLTKKSLALLPGTSNQTPQHFDDGYVV 299


>At1g28040.1 68414.m03433 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 336

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 325 TFKEICRVHYPEAAAVPGTGGIICP 399
           T +   +V   E+  +PGT GIICP
Sbjct: 267 TIESYKKVELGESRRLPGTNGIICP 291


>At1g12440.2 68414.m01438 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 168

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = -3

Query: 482 QQDQPILMMLRRLSSRSIA*NTRSDPQ*GHMMPPVPGTAAASG*CTLQISLNVFPCLCGL 303
           QQ Q I   +  L S S + +TR        + P   TA     C  ++ +  F C CG 
Sbjct: 70  QQSQEITQGV--LGSGSSSSSTRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCG- 126

Query: 302 STFLG 288
           STF G
Sbjct: 127 STFCG 131


>At1g12440.1 68414.m01437 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 168

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = -3

Query: 482 QQDQPILMMLRRLSSRSIA*NTRSDPQ*GHMMPPVPGTAAASG*CTLQISLNVFPCLCGL 303
           QQ Q I   +  L S S + +TR        + P   TA     C  ++ +  F C CG 
Sbjct: 70  QQSQEITQGV--LGSGSSSSSTRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCG- 126

Query: 302 STFLG 288
           STF G
Sbjct: 127 STFCG 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,703,913
Number of Sequences: 28952
Number of extensions: 191955
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)