Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0135
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.92 
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    28   1.6  
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    26   4.9  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 547 KHHHLPFQW*CSNNSYAVPVAPRNSVVISVFNFCSNCSAKFFI 419
           +H HLP QW  SN        P + +  +++N   N +  FF+
Sbjct: 119 EHRHLPSQWFPSNKIRTTKYTPVSFIPKNLWNQFKNIANAFFL 161


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 152 CYSSVRSCIKFKP-WDPIN 99
           CY  V++C+K KP W PI+
Sbjct: 232 CYLKVKACVKDKPEWQPIS 250


>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 234 HKRFFLCNANNRLKL 190
           HK F  CN NNR K+
Sbjct: 18  HKTFAFCNCNNRFKM 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,851
Number of Sequences: 5004
Number of extensions: 55408
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)