Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0135
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41864| Best HMM Match : Tropomyosin (HMM E-Value=0.17)              31   1.3  
SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)               29   4.0  
SB_46656| Best HMM Match : A2M (HMM E-Value=5.8e-39)                   29   5.2  
SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)                 29   5.2  
SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)                29   5.2  
SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79)               28   9.1  
SB_5822| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               28   9.1  

>SB_41864| Best HMM Match : Tropomyosin (HMM E-Value=0.17)
          Length = 227

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
 Frame = +2

Query: 260 FDDKNNDLIXNSGDILVXIEPVSYKLEDVQL---DLKTEHIRQ-NXPEXFEVRTLRNDEE 427
           +++K  D +  + +I+  I  V+ K+E+ +    DL+  H+R  N  + +E  TLR  E+
Sbjct: 91  YEEKTADKLSEAKNIVKDIAEVNKKIEEKKAKLYDLERRHLRALNKIDHYE-ETLRASEQ 149

Query: 428 LGATVTT 448
           +G  V T
Sbjct: 150 IGKRVVT 156


>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
          Length = 1486

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 248  TTLTFDDKNNDLIXNSGDILVXIEPVSYKLEDVQLDLK-TEHIRQNXPEXFEVRTLRNDE 424
            TT+   + NN+ I   G+++V   PVS ++ D   D K  EHI+Q   E    + L   E
Sbjct: 931  TTIKAVEINNNEITEDGEVIVQAIPVSVEVHD---DYKFNEHIKQ-VTEVNHAKGLSKSE 986

Query: 425  EL 430
            E+
Sbjct: 987  EV 988


>SB_46656| Best HMM Match : A2M (HMM E-Value=5.8e-39)
          Length = 319

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 505 SYAVPVAPRNSVVISVFNFCSNCSAKFFIVS*SXYFE 395
           +Y+V    R SV++SVFN+ S C      ++ S +FE
Sbjct: 149 AYSVIRGERVSVIVSVFNYLSQCLTIRINLAKSDFFE 185


>SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)
          Length = 142

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 505 YCLNTTIEMADGDVLPPIQWANPFTVRRTR---LHKLEKYLEPGDRLAM*HFSGQP 663
           YC+   I MAD  ++P +  AN F V  +R   + ++ + LE  D     H S QP
Sbjct: 79  YCVGDDITMADLCLVPQVYNANRFKVDMSRYPTIARIHEALEQVDAFKEAHPSRQP 134


>SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)
          Length = 1087

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 726 FSQWSKGDRALAVIIDISSRXG 661
           FS+W+KG R L +++D+ S+ G
Sbjct: 445 FSKWNKGFRYLLMVLDVFSKYG 466


>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -2

Query: 614 YFSSLCNLVRLTVNGLAHWIGGKTSPSAISMVVFKQ*LCRARGPKKQCSYKRIQFL 447
           YFSS+  +V  T+  +  W+     P+       K  L   R   K C Y   Q++
Sbjct: 402 YFSSVEKIVHTTIEIIILWVSDSAIPANRKWPKLKIPLVIVRPDSKVCGYLSCQYM 457


>SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
          Length = 701

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 726 FSQWSKGDRALAVIIDISSR 667
           FS+W+KG R L +++D+ S+
Sbjct: 106 FSKWNKGSRYLLMVLDVFSK 125


>SB_5822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 377 QNXPEXFEVRTLRNDEELGATVTTEIEYAYNYTVSW 484
           +N    F + + RN+ EL   +    +   NYTVSW
Sbjct: 311 RNHASSFRIESRRNETELSKHIWQLKDRRINYTVSW 346


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +2

Query: 248 TTLTFDDKNNDLIXNSGDILVXIEP-----VSYKLEDVQLDLKTEHIRQN 382
           T ++   +++DL+ N  D+   I P        + ED  L LKT+H R+N
Sbjct: 294 TPVSIAVRDHDLLVNPSDVYKGIAPSRDDKAKNEKEDHHLQLKTQHERKN 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,226,640
Number of Sequences: 59808
Number of extensions: 418477
Number of successful extensions: 940
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)