Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0135
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          51   1e-08

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 51.2 bits (117), Expect = 1e-08
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = +2

Query: 266 DKNNDLIXNSGDILVXIEPVSYKLEDVQLDLKTEHIRQNX---PEXFEVRTLRNDEELGA 436
           D   + I  SGD+LV  EP+ Y L  V+L+   + + +     P  F+  T+ N+    A
Sbjct: 192 DDGTEGIAKSGDVLVETEPIYYNLTMVKLNWPKKRVTKMSSINPCIFDNATIVNNGPEAA 251

Query: 437 TVTTEIEYAYNYTVSWGHGHGI 502
            +     Y YNY++ WG GH I
Sbjct: 252 KMAKAFTYTYNYSMYWGQGHAI 273



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
 Frame = +3

Query: 48  KSYSIFEVLENIENASLIDWIPWFKFNARPHGAVASSFSDSVFIGRMKASS-------GY 206
           +SY  +++LEN+ NA+ I+W    K+   P GAVA   ++ +F+ R  A +        Y
Sbjct: 114 QSYDKYDLLENVNNAARINWEYLDKYKPTPLGAVA---TEKMFVARHLAETPKNTSAVRY 170

Query: 207 SHYIGRI 227
           +HYIG +
Sbjct: 171 THYIGTL 177



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 511 LNTTIEMADGDVLPPIQWANPFTVRRTRLHKLEKYLEPG 627
           L T+I + +G  LP I W    T  RT  + +E  LEPG
Sbjct: 277 LKTSIILMNGTTLPQIMWGTKETSTRTDAYTVEIVLEPG 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,819
Number of Sequences: 438
Number of extensions: 4012
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)