Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0132
         (442 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    22   3.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   5.2  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    20   9.1  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 239 HLVVSYQIVYDICDELTLVIGVD*FASFNSRVVISN 132
           H +    ++ D+  EL   IGV  F SF+  V +SN
Sbjct: 32  HFMTPTLLLRDV--ELIKQIGVKEFDSFHDHVSVSN 65


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 311 QPGNNPGRCPRSLASRAGRVLHAVHLVVSYQI 216
           Q  NN     ++    AG  +HA H VV++ +
Sbjct: 310 QNNNNAATNNQNHHHHAGHHIHAQHHVVNHHV 341


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 283 GHRPGLFPG*VHTYLS*KL 339
           GH  GL+P  V T  + KL
Sbjct: 218 GHHSGLYPSAVDTTTNQKL 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,449
Number of Sequences: 336
Number of extensions: 1900
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)