Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0132
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   5.2  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      24   9.0  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    24   9.0  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    24   9.0  

>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 48  CLFAASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSK 167
           C  A   YAD      +  +E L +D+ I D+D+  E  K
Sbjct: 533 CTIAGVAYADVIPEDRQFTSEDLDSDMYIYDFDTLKENLK 572


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 138 DYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNCMEYPTS 263
           D D   + SKL Y D +G+  TN  N+L  + + + +  P+S
Sbjct: 115 DEDDNGKYSKLRYEDIEGQEDTNQANDLDADEEGSEISVPSS 156


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
 Frame = +3

Query: 138 DYDSAVERSKLIYTDNKGELITN--VVNNLIRNNKMNCMEYPTSSGCK--APRTSSGIVS 305
           ++   +E+ KLI   NK     N   V   I   ++        +G +  +P  S   + 
Sbjct: 642 EFADVIEQDKLIEIKNKRPAHINDVYVRPAIDGKRLPGFIEIHQNGIRYQSPLRSDSHID 701

Query: 306 RLSSHLS*LKTMLSLCTGETVSLLH*ATMAGLPTGAAKTGPVQ 434
            L S++  L      C GE + L+H    A +  G  KT  VQ
Sbjct: 702 LLFSNMKHL--FFQPCEGELIVLIHVHLKAPIMVGKRKTQDVQ 742


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +3

Query: 120 NDVIIADYDSAVERSKLIYT-----DNKGELITNVVNNLIRNNKMNCMEYPTSSGCKAP 281
           N+ +  +Y S    ++ +++     + +G+ ITNV+  LI  +  + ++      CK P
Sbjct: 224 NEEVTINYGSEKGSAEFLFSYGFLPEPEGDRITNVMKLLIPEDSNDSLDLAKRRSCKTP 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,632
Number of Sequences: 5004
Number of extensions: 30135
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)