Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0132
         (442 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14238| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.42 
SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11)                   27   5.2  

>SB_14238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
 Frame = -2

Query: 318 VNSTGKQSRTMSSEP-CIQSW*GTPCSSSCC---FV------SDCLRHL**AHPCYRC 175
           VNS G  S  +SSEP C+Q++ G      CC   F+        C++H    + C +C
Sbjct: 641 VNSNGSLSNPLSSEPQCVQTYGGNSNVGKCCSLPFIFRDTVYDKCIKHTHTGNMCQQC 698


>SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11)
          Length = 1140

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 63  SLYADEGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNK 188
           SL  D G  +   L+E L   + +A  D  +   K +Y D K
Sbjct: 455 SLLTDHGVLYPRALSEALLFKITLATVDQGLATKKFVYPDIK 496


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,074,875
Number of Sequences: 59808
Number of extensions: 255735
Number of successful extensions: 642
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)