Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0132
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    29   1.5  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    29   1.5  
U42838-2|AAB52493.1|  417|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    27   6.0  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    27   6.0  
U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
 Frame = +3

Query: 18   PKMKSAVVVLCLFAASLYADEGT-AFNEILAEHLY--NDVIIADYDSAVERSKLIYTDN- 185
            P +K+ VV LC+ A +LY    T    E + E LY  + V  A    + +R +++  +  
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 186  KGELITNVVNNLIRNNKMNCMEYPTSSGCKAPRTSSGIVSRLSSHLS 326
            + E   N++N  +      C+E       KA    +GI+S L  +LS
Sbjct: 982  EPETYHNILN--VMPEGQACLE-------KAYDCVNGIMSDLEEYLS 1019


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
 Frame = +3

Query: 18   PKMKSAVVVLCLFAASLYADEGT-AFNEILAEHLY--NDVIIADYDSAVERSKLIYTDN- 185
            P +K+ VV LC+ A +LY    T    E + E LY  + V  A    + +R +++  +  
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 186  KGELITNVVNNLIRNNKMNCMEYPTSSGCKAPRTSSGIVSRLSSHLS 326
            + E   N++N  +      C+E       KA    +GI+S L  +LS
Sbjct: 982  EPETYHNILN--VMPEGQACLE-------KAYDCVNGIMSDLEEYLS 1019


>U42838-2|AAB52493.1|  417|Caenorhabditis elegans Hypothetical
           protein T08G2.3 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +3

Query: 48  CLFAASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNLIR 227
           CL  ++ YA E  AF  ++A H     ++AD    +E ++LI T      + N V +   
Sbjct: 285 CLDESAKYALERKAFGTVIANHQAVQFMLADMAVNLELARLI-TYKSANDVDNKVRSSYN 343

Query: 228 NNKMNCMEYPTSS 266
            +   C    T++
Sbjct: 344 ASIAKCFAADTAN 356


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
           protein 1 protein.
          Length = 1852

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 287 CPRSLASRAGRVLHAVHLVVSYQIVYDICDELTLVI 180
           C +++   AG +LH V L + Y+I  +    +  VI
Sbjct: 631 CSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVI 666


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
           C.elegans RNA polymeraseII largest subunit (ama-1 IV)
           gene, complete cds. ).
          Length = 1859

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 287 CPRSLASRAGRVLHAVHLVVSYQIVYDICDELTLVI 180
           C +++   AG +LH V L + Y+I  +    +  VI
Sbjct: 631 CSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVI 666


>U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical
           protein C42D4.2 protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 22/81 (27%), Positives = 33/81 (40%)
 Frame = +3

Query: 21  KMKSAVVVLCLFAASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNKGELI 200
           K K+  VV+ L   +L+ D    FN+    H Y    I     AV     I++    E  
Sbjct: 31  KSKNCAVVIYLHGGNLHYDSAVMFNDTFLLHTYASQEIVFVIPAVRLG--IFSHFVVEDQ 88

Query: 201 TNVVNNLIRNNKMNCMEYPTS 263
           +   NNL   + +  ME+  S
Sbjct: 89  SIAPNNLALFDMLQAMEFAKS 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,424,884
Number of Sequences: 27780
Number of extensions: 182457
Number of successful extensions: 521
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)