Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0131
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0279 + 28917281-28917400,28917535-28917617,28918171-289183... 39 0.004
07_01_0947 + 7982783-7983619,7983713-7983859,7983953-7984318 36 0.049
02_05_1094 + 34060262-34060385,34061256-34061428,34061505-340616... 31 0.79
02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918... 31 1.0
12_02_1233 + 27224219-27225607 29 3.2
06_03_1373 + 29667871-29668782,29668872-29669851,29670156-296703... 29 5.6
01_05_0379 + 21630223-21631188 29 5.6
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 28 7.4
12_01_0496 + 3939731-3939758,3940459-3942773 28 9.7
07_03_0861 + 22072041-22072789,22074065-22074164 28 9.7
03_01_0228 + 1802038-1803265,1804207-1804245,1804638-1804783,180... 28 9.7
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 9.7
>05_07_0279 +
28917281-28917400,28917535-28917617,28918171-28918321,
28918415-28918514,28918777-28918849,28918968-28919023,
28919170-28919258,28919426-28919581
Length = 275
Score = 39.1 bits (87), Expect = 0.004
Identities = 28/92 (30%), Positives = 41/92 (44%)
Frame = -1
Query: 319 WHISSISLRPVVSMSQPIREYFLVGDRLASQPVREALQYSLPFRFPFTFHFSHHGPLMPN 140
WH+SS + +S + + F +GD ++S+P Y L P + H PL PN
Sbjct: 157 WHLSSENS---ISTTGAQKYTFTLGDTISSKPASNGSMYLLGKDIPAS---PMHKPLQPN 210
Query: 139 FANSFDEQMFGKTKILSPRRPGMMHDECFKVI 44
SFD K + S +PG MH F +
Sbjct: 211 GNTSFD----AKKNVGSKDQPGFMHMSTFNAL 238
>07_01_0947 + 7982783-7983619,7983713-7983859,7983953-7984318
Length = 449
Score = 35.5 bits (78), Expect = 0.049
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Frame = -2
Query: 414 PVHCDDVSLQG*GHHMA*YIGNKSVSEYMLLFGISHLLVSVLLYPCPSR*ESTSWWETDW 235
P+ C D++L+ ++ Y GNKS ++ + F ++ ++ ++ C +R W E
Sbjct: 349 PIECLDLNLKK--VEVSGYCGNKSHIDFAMFFVLNGRVLELMRLECGTRRNDRKWIENQK 406
Query: 234 LLSQCGRHFS--IRFHF---ASHSLFTSVTMAH*CLI 139
+ + S FHF S + FT+V AH LI
Sbjct: 407 MCLKLDNMVSKDAEFHFTRRTSWNYFTNVRRAHELLI 443
>02_05_1094 +
34060262-34060385,34061256-34061428,34061505-34061686,
34061789-34062073,34062160-34062218,34062349-34062385,
34062485-34062556,34063613-34063937,34064027-34064410
Length = 546
Score = 31.5 bits (68), Expect = 0.79
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 238 LASQPVREALQYSLPFRFPFTFHFSHHGPLMPNFANSFDEQMFGKT 101
L +Q + + P + PF F+F+ GPLMP N F + +T
Sbjct: 362 LVNQVITNVSNGNFPPQTPF-FYFNQSGPLMPTLCNPFTADLNNRT 406
>02_04_0366 -
22389591-22390527,22391296-22391429,22391762-22391816,
22392364-22393225,22393342-22393459,22393647-22393737,
22394627-22394670
Length = 746
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 269 DKRVLPGGRPTGFSASAGGTSVFASISLPIHFSL 168
D+ + PG P GF+ AG SVF +S+ + SL
Sbjct: 506 DRHLRPGAAPGGFAIPAGSLSVFLFLSILLFTSL 539
>12_02_1233 + 27224219-27225607
Length = 462
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +3
Query: 213 ASRTG*EASRSPTRKYSLIGWDMDTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLNPGA 392
+SRT E S + S + T G IDE+C + + P TYS Y G L
Sbjct: 181 SSRTEPEGSTWRWEERSFVREGNATMGT--IDEVCSSSGWEPFDTYSVYFR--GSLYVHC 236
Query: 393 RRRHNVRVVTVG-RYRMLK 446
+ +R+ RYR++K
Sbjct: 237 QNNCVIRITIANHRYRIIK 255
>06_03_1373 +
29667871-29668782,29668872-29669851,29670156-29670350,
29670460-29670676
Length = 767
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 182 WEAKWKRILKCLPHWLRS 235
W A+W R L+ PHWL +
Sbjct: 562 WPAEWPRRLRAPPHWLNA 579
>01_05_0379 + 21630223-21631188
Length = 321
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +1
Query: 655 QLCTGCRLNAKATVKSVSLRVXG---SWCYWNAGSL 753
QLC G RL A V V+LR +WC W+A +
Sbjct: 61 QLCRGHRLRAPLVVGLVALRGRAPPYNWCPWDASGV 96
>08_02_0733 + 20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -1
Query: 211 LQYSLPFRFPFTFHFSHHGPLMPNFANSFDEQMFGKTK 98
LQ PF PF H H P SFDE+ F +TK
Sbjct: 1349 LQADRPFDSPFPVHDHEHE--YPEEDQSFDEETFVRTK 1384
>12_01_0496 + 3939731-3939758,3940459-3942773
Length = 780
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +2
Query: 47 NFKTFVVHHTGSTGAQYFCFTKHLFIKRVCKIRH*WAMVTEVKSEWEAKW 196
N+ T TG Y+CF F+ +C I W + + S A W
Sbjct: 424 NYATQSNKGTGMMWYYYYCFLAAFFLVELCFIAFGWWFMAKTHSARSAIW 473
>07_03_0861 + 22072041-22072789,22074065-22074164
Length = 282
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 282 DTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLN-PGARRRH 404
D RR+I +IC I+ ++PKQ +S+ ++ + + GAR+ +
Sbjct: 226 DALRRRMI-QICYISHWSPKQCFSRRLVWFNEKECSGARKEY 266
>03_01_0228 +
1802038-1803265,1804207-1804245,1804638-1804783,
1804891-1804958,1805045-1805147,1805287-1805400
Length = 565
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 375 DLNPGARRRHNVRVVTVGRYRMLKDMVSHKILKTKSEISALT 500
+L P R H++RVV + R+ D +I+ T EISA T
Sbjct: 145 ELLPKLPRAHDLRVVLLESARLPGDSSDPRIVATIEEISATT 186
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 44 NNFKTFVVHHTGSTGAQYFCFTKHLFIKRVCKIRH 148
+ F ++ HH G+ G + +C K ++ + K+R+
Sbjct: 142 DTFWCYIGHHYGARGVRCYCVPKVVYTLKTLKVRN 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,539,127
Number of Sequences: 37544
Number of extensions: 455386
Number of successful extensions: 1142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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