Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0131
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_39321| Best HMM Match : RVT_1 (HMM E-Value=4.5e-39)                 29   5.7  
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1801

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 67   HDECFKVILLL*NITISQHVCG 2
            HD+ FKV L+L +  ++QH CG
Sbjct: 1511 HDQLFKVFLVLLDFRVTQHQCG 1532


>SB_39321| Best HMM Match : RVT_1 (HMM E-Value=4.5e-39)
          Length = 900

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +3

Query: 357 YIMPYGDLNPGARRRHNVRVVTVGRYRMLKDMVSHKILKTKSEISALTDFLIG*RKRKEM 536
           ++MP+ DL     R  ++  VT    ++L+ ++ H + +   +   L+DF  G RKR+  
Sbjct: 456 FVMPFKDLATNNYRPVSLTSVTC---KILEHVICHHVWQHLEQHGILSDFQHGFRKRRNC 512

Query: 537 VVSFLYT 557
               + T
Sbjct: 513 ETQLIIT 519


>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/69 (26%), Positives = 37/69 (53%)
 Frame = +2

Query: 161 VTEVKSEWEAKWKRILKCLPHWLRSQSVSHQEVLSYRLGHGYNRTETNR*DMPNSSIYSE 340
           +TE+ ++ + K + I++ +    RS+     E L+ +  +GYN  + N  +   SS+Y E
Sbjct: 440 MTEIPTKPKKKSRSIIQTILRRSRSRDKFRYEFLAAK--YGYNYKQFNHPEHKRSSLYDE 497

Query: 341 TDLFPIYYA 367
            +  P +Y+
Sbjct: 498 NE--PDWYS 504


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,020,485
Number of Sequences: 59808
Number of extensions: 531016
Number of successful extensions: 1229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)