Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0130
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi...    28   3.3  
At4g33920.1 68417.m04813 protein phosphatase 2C family protein /...    27   5.8  

>At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 839

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +2

Query: 185 SVCEGSLGLSILVSIIRSHGN----DYFKDLEYYNDKIFIYNNFYNSFMFYKKYILIGSN 352
           SV   +  L+ L+  ++ HG     +   DL   N  + +Y    N+   YK +  I   
Sbjct: 443 SVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEP 502

Query: 353 NIIFYNIFVYKFKF 394
           NI+ YN  +  + +
Sbjct: 503 NIVSYNTMISGYSY 516


>At4g33920.1 68417.m04813 protein phosphatase 2C family protein /
           PP2C family protein similar to Ser/Thr protein
           phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
           thaliana]; similar to protein phosphatase 2C
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 380

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 218 LVSIIRSHGNDYFKDLEYYNDKIF 289
           ++ + RS G+ Y K  EYY D IF
Sbjct: 210 IIQVSRSIGDVYLKKPEYYRDPIF 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,834,209
Number of Sequences: 28952
Number of extensions: 50097
Number of successful extensions: 185
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)