Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0129
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    55   1e-08
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    28   1.6  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   3.7  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   4.9  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   4.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   4.9  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   6.4  

>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 27/80 (33%), Positives = 38/80 (47%)
 Frame = +1

Query: 256 EGRMYLTTHRMIYNSKKNTDAMRSFSFPFIALQDVTVEQPMFSANCIKGKVRAQPNGNFI 435
           +G + LT  R++Y +K      + F  P   L+D  + QP F AN   G V   PNG   
Sbjct: 49  KGLLCLTNQRLVYIAKDTDCDFKDFQSPVANLKDTKLNQPFFGANYYSGTVMPVPNGGIP 108

Query: 436 GEVKFKLTFKSGGAIEYGQA 495
            E + KL F  GG   + +A
Sbjct: 109 CEAEVKLQFNEGGIFNFVEA 128


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 134 LNTAHADHGVLIHAGECII--LFSDNVSVEFYGNDT 235
           LN A +D G  I A +  +  L S N  +EFYG+DT
Sbjct: 114 LNIAESDTGSSIEAQDSWVYQLNSFNKKIEFYGDDT 149


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 206 VSVEFYGNDTPEFKGIRRDGCTSLLIE*FTIQRRIQMP 319
           VS+ FY    PEFK +  DG   +  + F I+R  ++P
Sbjct: 557 VSLTFYYVLLPEFKSVLYDGLVEISCD-FKIRRTFRIP 593


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +2

Query: 155 HGVLIH--AGECIILFSDNVSVEFYGNDTPEFKGIRRDGCTSLLIE*FTIQRRIQMP*DH 328
           +GVL +   GEC  LFS N S   +    P F GI R+  +   +  F   R I+     
Sbjct: 417 YGVLENEETGECAFLFSPNASQPHFQPRAPTF-GIPRNVRSLFTLPFFHTIRNIERHFRL 475

Query: 329 SVFLLLHCKM*LWN 370
            + L L C +  +N
Sbjct: 476 FIRLALFCVLTTYN 489


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 92   LNVIYNQXNNCIMSLNTAHADHGVLIHAGECI-ILFSDNVS 211
            L+ + NQ    + S+N   ADH  L+ A EC  IL +D+ S
Sbjct: 1396 LHELVNQFLTGVASINHPIADHVFLLCAQECCRILLTDSKS 1436


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 663 PPPXSVFVSNTPPPLPWAVTGASYP 737
           PPP  +     PPP P  V GA  P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPP 776


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 636 PPYSAFPDQPPPXSVFVSNTPPPLPWAVTGASYP 737
           PPY + P +P P +V  S++  P+  A   A  P
Sbjct: 356 PPYPSAPTRPTPPTVQTSSSAAPVDSAEPVAYQP 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,591
Number of Sequences: 5004
Number of extensions: 52955
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)