Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0129
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0710 + 19660895-19661004,19661571-19661682,19661808-196618... 37 0.019
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 34 0.14
09_02_0603 - 11150739-11150746,11150791-11151340 31 0.95
06_03_0395 - 20354713-20355570 31 1.3
07_03_0441 + 18256103-18258076 29 2.9
03_01_0515 - 3864796-3865425 29 2.9
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 29 5.1
09_04_0755 - 19948942-19949088,19949249-19949396,19949512-199496... 29 5.1
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 5.1
01_06_0347 + 28592552-28593502 29 5.1
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727... 28 6.7
09_02_0369 - 8012470-8013120 28 6.7
06_03_1310 + 29238644-29240260 28 6.7
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 28 8.9
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 28 8.9
07_01_0516 - 3850252-3852870 28 8.9
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 28 8.9
04_04_0058 - 22416949-22418196 28 8.9
>09_04_0710 +
19660895-19661004,19661571-19661682,19661808-19661879,
19661964-19662184,19662272-19662377
Length = 206
Score = 36.7 bits (81), Expect = 0.019
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +1
Query: 256 EGRMYLTTHRMIYNSKKNTDAMRSFSFPFIALQDVTVEQPMFSANCIKGKVR----AQPN 423
+G +YL+ RM++ + K +F P + + QP+F N I G V N
Sbjct: 46 KGTIYLSNIRMVFVASKPVGNFFAFDMPLLYVHGEKFNQPIFHCNNISGFVEPVVPENQN 105
Query: 424 GNFIGEVKFKLTFKSGG 474
FK+ FK GG
Sbjct: 106 RALYSTHTFKILFKEGG 122
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 636 PPYSAFPDQPPPXSVFVSNTPPPLPWAVTGASY 734
PPY+++P PP S++ N PPP P T Y
Sbjct: 440 PPYASYPPPPPGSSMY--NPPPPAPGQATPPPY 470
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Frame = +3
Query: 633 VPPYSAFPDQPPPXSVFV----SNTPPPLP 710
+PP FP PPP S FV S PPP P
Sbjct: 37 LPPPFGFPPPPPPGSTFVPLPQSGVPPPPP 66
>06_03_0395 - 20354713-20355570
Length = 285
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 636 PPYSAFPDQPPPXSVFVSNTPPPLPWAVTGAS 731
PP + PD PP + + +P PLPWA A+
Sbjct: 250 PPAATLPD--PPEAARIWRSPSPLPWAAPPAA 279
>07_03_0441 + 18256103-18258076
Length = 657
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 630 WVPPYSAFPDQPPPXSVFVSNTPPPLPW 713
W+ PY+ D P + S++P P PW
Sbjct: 32 WIEPYTDLSDPRPYAASSASSSPTPSPW 59
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = +3
Query: 636 PPYSA---FPDQPPPXSVFVSNTPPPLP 710
PP +A P PPP SV S PPPLP
Sbjct: 62 PPPAAGPLMPPPPPPPSVTSSPPPPPLP 89
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 476 APPDLKVSLNLTSPIKLPLGWARTL 402
APP V+L L+ +K P GW +TL
Sbjct: 913 APPRYLVALELSGMLKKPPGWIKTL 937
>09_04_0755 -
19948942-19949088,19949249-19949396,19949512-19949648,
19949933-19949995,19950175-19950288,19951410-19951514,
19951794-19951853,19952604-19952639,19953176-19953467,
19954168-19954253,19954641-19954901
Length = 482
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 400 GKVRAQPNGNFIGEVKFKLTFKSGGAIEYGQ 492
G+ RA P G GE+ F SGG I +G+
Sbjct: 69 GRRRASPAGALSGEMPASAAFVSGGIISWGK 99
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 636 PPYSAFPDQPPPXSVFVSNTPPPLPWAVTGASYP 737
PP P PPP PPP P T A +P
Sbjct: 365 PPPPPPPRPPPPPPPIKKGAPPPAPPKATMARFP 398
>01_06_0347 + 28592552-28593502
Length = 316
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 642 YSAFPDQPPPXSVFVSNTPPPLPWAV 719
YS+ P PP S+ V+ TPPP + V
Sbjct: 25 YSSAPTPPPSPSLVVAPTPPPSSFLV 50
>12_02_0811 -
23370455-23370472,23372279-23372538,23372645-23372713,
23372979-23373105,23373187-23373422,23373509-23373678,
23373855-23373935,23374013-23374084,23374273-23374344,
23374450-23374588,23375141-23375643,23376817-23377010,
23377952-23378488
Length = 825
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -2
Query: 491 CPYSIAPPDLKVSLNLTS-----PIKLPLGWARTLPFIQLAEN 378
C YS + P L +LNL+S P+ L G ++L ++ L+ N
Sbjct: 445 CGYSSSDPALVTALNLSSSVLIGPVNLSFGDLKSLQYLDLSNN 487
>09_02_0369 - 8012470-8013120
Length = 216
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 636 PPYSAFPDQPPPXSVFVSNTPPP 704
PP+ P +PPP F++ PPP
Sbjct: 43 PPHDDPPLKPPPQQQFITAQPPP 65
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 633 VPPYSAFPDQPPPXSVFVSNTPPPLP 710
+PP P PPP S S+ PPP P
Sbjct: 389 MPPRRTPPTPPPPSSPTPSHLPPPPP 414
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 636 PPYSAFPDQPPPXSVFVSNTPPPLP 710
P + P PPP S S+ PPP P
Sbjct: 78 PALAPTPTPPPPSSTASSSLPPPTP 102
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 636 PPYSAFPDQPPPXSVFVSNTPPP 704
PP FP QPPP + + PPP
Sbjct: 13 PPQGGFPPQPPPMNPY--GPPPP 33
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 636 PPYSAFPDQPPPXSVFVSNTPPPLPWAVTGASYP 737
PP P PPP ++ PPP P+ V + P
Sbjct: 76 PPQQQQP--PPPPQMYYQPPPPPPPYGVNSSQPP 107
>07_01_0516 - 3850252-3852870
Length = 872
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 636 PPYSAFPDQPPPXSVFVSNTPPPLP 710
PP P QPPP S + PPP P
Sbjct: 10 PPPRLLPPQPPPTSRPLPPPPPPPP 34
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 648 AFPDQPPPXSVFVSNTPPPLPWAVTGA 728
A P PP S+ VS++PP LP V G+
Sbjct: 38 ARPPSPPRASIPVSSSPPLLPPPVAGS 64
>04_04_0058 - 22416949-22418196
Length = 415
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 645 SAFPDQPPPXSVFVS--NTPPPLPWA 716
S++P PPP SV ++ +P P PWA
Sbjct: 22 SSWPLSPPPPSVILTPFASPSPAPWA 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,587,755
Number of Sequences: 37544
Number of extensions: 351684
Number of successful extensions: 1415
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -