Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0128
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    49   5e-07
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    47   2e-06
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    33   0.039
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   1.9  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   5.9  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    25   7.7  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   7.7  

>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 31/98 (31%), Positives = 48/98 (48%)
 Frame = +2

Query: 257 AQEAWHAWAELPAPARGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEVIEYIHVC 436
           A EA+ ++       R  ++R+  D + EN   L  +++LE GK L +A GEV+      
Sbjct: 70  AHEAFLSYRNSDIKERYAILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYAAKFI 129

Query: 437 DLALGLSRTLPGTVFPSERPGHVLFEKWNPLGVVGIIT 550
           D   G +  + G    S  P + +     P+GVVGIIT
Sbjct: 130 DWFAGEALRISGDSSMSSNPQNRIITIKQPVGVVGIIT 167


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
 Frame = +2

Query: 278 WAELPAPARGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEVIEYIHVCDLALGLS 457
           WA+ P   RG V+R+I   +RE  + L  + ++  GK  P A+ ++     + +    ++
Sbjct: 78  WAKWPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVA 137

Query: 458 RTLPGTV-FP-SERPGHVLFEKWNPLGVVGIIT 550
            T   TV  P    PG   FEK  P GV+G+IT
Sbjct: 138 ETDNPTVKVPLPNNPGFCAFEKRFPRGVIGVIT 170


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 32.7 bits (71), Expect = 0.039
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = +2

Query: 245 VRQSAQEAWHAWAELPAPARGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEV 415
           V ++A +    W +  +  RG  + ++ D + +NL+ L  + +L+ GK +  A G+V
Sbjct: 68  VARAAFQTDAPWRKFSSAQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDV 124


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 209 QKCKRAAXRL*GVRQSAQEAWHAWAE 286
           +KC     R+ GVR    + WH W +
Sbjct: 754 KKCAMTTSRVLGVRICGMQVWHPWLQ 779


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 341 ENLQPLGKLVSLEMGKILPEAIGEVIEYIHVCDLALGLSRTLPGTVFP 484
           ++L P GKL+SL+    L + +G + E +   DL++    TLP + FP
Sbjct: 174 DDLNP-GKLISLQNLYNLLKKLGGIAEPLPQLDLSISSLYTLP-SFFP 219


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 356 LGKLVSLEM-GKILPEAIGEVI-EYIHVCDLA 445
           +G+L  L + G   P + G  I +YIHVCDLA
Sbjct: 218 VGRLDHLNVFGDDYPTSDGTPIRDYIHVCDLA 249


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 118 KENNVGVFNGKWKANGEVIKSYSPANGKVIAEVQA 222
           KEN+ GV +  W +NG  I +     G +I + Q+
Sbjct: 227 KENHSGVTDISWSSNGMYIAASFKKGGILIWDTQS 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,291
Number of Sequences: 5004
Number of extensions: 49077
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)