Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0128
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13735| Best HMM Match : No HMM Matches (HMM E-Value=.)             146   1e-35
SB_58786| Best HMM Match : Aldedh (HMM E-Value=0)                      50   2e-06
SB_36729| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)                44   9e-05
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)               42   3e-04
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     30   1.1  
SB_53077| Best HMM Match : SRP54_N (HMM E-Value=1.8)                   29   2.0  
SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)         29   2.0  
SB_33542| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_43594| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)           28   6.1  
SB_3940| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_23317| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39)                 27   8.1  

>SB_13735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score =  146 bits (354), Expect = 1e-35
 Identities = 66/96 (68%), Positives = 74/96 (77%)
 Frame = +2

Query: 269 WHAWAELPAPARGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEVIEYIHVCDLAL 448
           W    E P P RGEVVRQIG ALRE L PLGKL+SLE+GKI PE +GE+ EYI VCD A+
Sbjct: 63  WGGKGETPGPKRGEVVRQIGHALREKLTPLGKLLSLEVGKIFPEGVGEIQEYIDVCDYAV 122

Query: 449 GLSRTLPGTVFPSERPGHVLFEKWNPLGVVGIITAF 556
           GLSR   G VFPSERPGH L E+WNP+G VG+ITAF
Sbjct: 123 GLSRMFDGKVFPSERPGHALLEQWNPVGTVGVITAF 158



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 28/66 (42%), Positives = 41/66 (62%)
 Frame = +1

Query: 61  STAFLIEDPKYSFLKDLGLKENNVGVFNGKWKANGEVIKSYSPANGKVIAEVQAGSAXIM 240
           S A LIE+ KYS+L++LGLK +N GV+NG W   GE   +  P  G+V+ ++  G A   
Sbjct: 33  SGALLIENEKYSWLRELGLKADNPGVYNGTWGGKGE---TPGPKRGEVVRQI--GHALRE 87

Query: 241 RRAPVG 258
           +  P+G
Sbjct: 88  KLTPLG 93


>SB_58786| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 421

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 27/86 (31%), Positives = 45/86 (52%)
 Frame = +2

Query: 293 APARGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEVIEYIHVCDLALGLSRTLPG 472
           A  R  ++R+  D + EN+  + K+++LE GK L EA GEV+   +  +     ++ + G
Sbjct: 4   AKERSIILRKWYDLILENIDDIAKIITLESGKPLLEARGEVLYAANYIEFFSEEAKRVYG 63

Query: 473 TVFPSERPGHVLFEKWNPLGVVGIIT 550
            + PS  PG  +     P+GV   IT
Sbjct: 64  DIIPSNNPGQKVLITKEPVGVCASIT 89


>SB_36729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 21/36 (58%), Positives = 27/36 (75%)
 Frame = +1

Query: 61  STAFLIEDPKYSFLKDLGLKENNVGVFNGKWKANGE 168
           S A LIE+ KYS+L++LGLK +N GV+NG W   GE
Sbjct: 33  SGALLIENEKYSWLRELGLKADNPGVYNGTWGGKGE 68


>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 23/103 (22%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
 Frame = +2

Query: 251 QSAQEAWH---AWAELPAPARGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEVIE 421
           ++A+EA+    AW  + A  RG+++ ++   +  ++  L  L +++ GK+  +++G++  
Sbjct: 374 KAAKEAFKLGSAWRTMDASMRGKLLYKLAQLIDRDIAYLASLETIDSGKLFSDSVGDMQS 433

Query: 422 YIHVCDLALGLSRTLPGTVFPSERPGHVLFEKWNPLGVVGIIT 550
             +      G +  + G   P++ P + ++ +  P+G+VG IT
Sbjct: 434 SANCFRYYAGWADKVTGKTIPADGP-YFVYTRHEPVGLVGAIT 475


>SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)
          Length = 275

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
 Frame = +2

Query: 278 WAELPAPARGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEVI---EYIHVCDLAL 448
           W +     R  V+  IGD L      LG +++ E GK L E +GE     ++ H    A 
Sbjct: 59  WQKSGLEQRYSVLMAIGDELIARKDELGAILAREEGKTLAEGVGETYRSGQFFHY--YAA 116

Query: 449 GLSRTLPGTVFPSERPGHVLFEKWNPLGVVGIIT 550
            + R + G    S RPG  +  +  P+GVVGIIT
Sbjct: 117 EVLRQM-GETAESVRPGIEIETRREPVGVVGIIT 149


>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
          Length = 1485

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 26/91 (28%), Positives = 43/91 (47%)
 Frame = +2

Query: 278  WAELPAPARGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEVIEYIHVCDLALGLS 457
            W  + A ARG  + ++ D    +   L +L S + GK++ EA  +V   I       G +
Sbjct: 1256 WRTMDASARGHFLYKLADLCERDADYLARLESYDGGKVINEAKIDVQGMIGCFRYYAGWA 1315

Query: 458  RTLPGTVFPSERPGHVLFEKWNPLGVVGIIT 550
              + G   P++ P    + +  P+GVVG IT
Sbjct: 1316 DKVTGKTIPADGP-FFTYTRHEPVGVVGAIT 1345


>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +2

Query: 248 RQSAQEAWHAWAELPAPARGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEVIEY 424
           +Q  +E+W+  +  P P R   V +IGD  RE L  L +L  L M     +  G    Y
Sbjct: 449 KQGDEESWYGDSR-PKPRRKLTVLEIGDLEREYLLVLARLQLLRMDADPSQGTGRAKRY 506


>SB_53077| Best HMM Match : SRP54_N (HMM E-Value=1.8)
          Length = 533

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 9/46 (19%)
 Frame = +2

Query: 419 EYIHVCDLALGLSRTL---PGTVFPSERPG---HVLFEKW---NPL 529
           +++     A GL+RTL   P  V+PS+RPG    + F+ W   NPL
Sbjct: 192 QFLGALAFAKGLNRTLVLPPWIVYPSQRPGGSERISFDSWFRVNPL 237


>SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)
          Length = 281

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 31  YIRVPMARNASTAFLIEDPKYSFLKDLGLKENNVGVFNGKWKANG 165
           YIR P ARNA   +  E+    +  D    E N G  + +WK NG
Sbjct: 21  YIRNPAARNACKQYGFEECIIEWTMD----EKNCGGLSAQWKDNG 61


>SB_33542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1182

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 52  RNASTAFLIEDPKYSFLKDLGLKENNVGVFNGKWKANGEVI 174
           R  ST F ++  K  F+   GL+  NV V  G    N EVI
Sbjct: 25  RFLSTLFPLQTKKKRFITHFGLRSRNVLVMTGNAHRNPEVI 65


>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/50 (26%), Positives = 30/50 (60%)
 Frame = +2

Query: 251 QSAQEAWHAWAELPAPARGEVVRQIGDALRENLQPLGKLVSLEMGKILPE 400
           ++A+ A+ +W++LP  AR   +  I   ++++ + +  L S++ GK + E
Sbjct: 686 KAARTAFQSWSKLPGHARARHLYSIARHVQKHARLIAVLESMDNGKSVRE 735


>SB_43594| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
          Length = 342

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +1

Query: 22  SLRYIRVPMAR-NASTAFLIEDPKYSFLKDLGLKENNVGVFNGKWKANGEVIKSY 183
           S R   +P+A      A L+ D K  F KD+ L+     +    WK   E I  Y
Sbjct: 52  SSRKYAIPIAELTTEMAKLLRDVKVFFTKDINLERKGSPISPSTWKKANERILCY 106


>SB_3940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 261 RKRGMRGRNCPRLQEARSLD 320
           RKR ++G N P +QE RS D
Sbjct: 8   RKRTLKGENRPEIQETRSYD 27


>SB_23317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 237 YEACASRHRKRGMRGRNCPRLQE 305
           Y  CASR  KR   G  CPR  +
Sbjct: 203 YGGCASRFPKRTQDGTTCPRFNQ 225


>SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39)
          Length = 657

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 139 FNGKWKANGEVIKSYSPANGK 201
           F+GKW+ +G +++SY  ++ K
Sbjct: 132 FSGKWRCSGVIVRSYHKSSHK 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,501,082
Number of Sequences: 59808
Number of extensions: 396768
Number of successful extensions: 1072
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)