Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0128
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.9  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   8.6  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 12  SCVIASLY*STNGSQRINSFPHRGPEVLVFEGFRFKRKQC 131
           SCVIAS + +   ++  N  P R   +   +  R +R +C
Sbjct: 222 SCVIASRHRNLEATESENVRPRRNVLIERAKSIRARRTEC 261


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 305 LLQARAVPPTHATLPVPTGARLIIXALPACTSAITL 198
           LL A  +PPT  T+P+     L    L   +  +T+
Sbjct: 283 LLLAEIIPPTSLTVPLLGKYLLFTMVLVTLSVVVTI 318


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +1

Query: 259 TGSVACVGGTARACKRRGR*TNRRCSKGKPSATWKASVIRN 381
           TGS    G  A A     R +   CS G  S+T   +  RN
Sbjct: 152 TGSSCGPGAAAAAALLSKRRSVSECSLGTASSTSSTASSRN 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,912
Number of Sequences: 438
Number of extensions: 3130
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)