Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0127
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.9  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   1.9  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   3.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   3.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   3.3  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   3.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.7  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 336 SSPWRPAADMGT--NRXDISTYIPX*IFKAAESIRTPPQMRCSSRSEPY 196
           +SP +P   + T  N+   ST +   I+ +++  RT PQ+   S   PY
Sbjct: 440 NSPTKPYYKLKTANNKRPPSTELGTNIYTSSKRQRTSPQLSPMSSLPPY 488


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 461 HRXHPLPVQTRHAPVLRANPYS 396
           +R HPL + + H  +L  NP S
Sbjct: 332 NRCHPLSLSSDHQAMLHHNPMS 353


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 287 SPRTSXPEFSRPQRVSG 237
           +P T+ P + +PQ +SG
Sbjct: 8   NPGTALPTYQQPQHISG 24


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 287 SPRTSXPEFSRPQRVSG 237
           +P T+ P + +PQ +SG
Sbjct: 8   NPGTALPTYQQPQHISG 24


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 287 SPRTSXPEFSRPQRVSG 237
           +P T+ P + +PQ +SG
Sbjct: 8   NPGTALPTYQQPQHISG 24


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 287 SPRTSXPEFSRPQRVSG 237
           +P T+ P + +PQ +SG
Sbjct: 8   NPGTALPTYQQPQHISG 24


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 138 PYLSAASSGHFGLPRRTLVFKDEG 67
           P++S++     G      VFKDEG
Sbjct: 2   PHVSSSGGDDLGSTDEVKVFKDEG 25


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = +1

Query: 421 GACRVWTGSGCXRCRVWSMFVRYVR 495
           G   +  G+GC R ++  ++++++R
Sbjct: 744 GTLMMVLGTGCVRIKITGVWLKFLR 768


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,272
Number of Sequences: 336
Number of extensions: 3640
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)