Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0127
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.94
06_01_0350 + 2534422-2535615 31 1.2
12_02_0407 - 18654134-18654172,18654913-18655803 30 2.2
05_06_0098 + 25560158-25560925 30 2.2
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.9
12_02_0351 - 17829874-17830005,17830250-17830267,17830544-178306... 29 5.0
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 5.0
02_01_0091 + 646299-649082 28 6.6
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 28 8.7
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.94
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -3
Query: 482 TNIDQTRH------RXHPLPVQTRHAPVLRANP 402
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 178 PWXSNAQAEKKTLPXPLGGVFRP 110
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 35 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERXGKSFLFCLSVRXPWNPIEGRY 199
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>05_06_0098 + 25560158-25560925
Length = 255
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = -3
Query: 461 HRXHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 282
HR P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
Query: 281 RTSXP 267
P
Sbjct: 91 SQRPP 95
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 452 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 363
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>12_02_0351 -
17829874-17830005,17830250-17830267,17830544-17830672,
17831037-17831336,17831447-17831675,17831762-17831989,
17832380-17832645
Length = 433
Score = 28.7 bits (61), Expect = 5.0
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Frame = +1
Query: 364 KGSRQIGSVTSE*GLALRTGACRVWTGSGCX-----RCRVWSMFVRYVRFSELDFNIMRP 528
+G R++ G A+ GA W G RC++ + Y S+L I RP
Sbjct: 34 RGGRRVEQRRDRRGNAVVGGAPSSWNGGDLHLQHLPRCQIRCLSALYS--SDLHLQI-RP 90
Query: 529 QKLYIFNMTLAKIVLRFRTGSGPVVLRPSAGSXLAVSRVGFVSCAIGHDF 678
Y+ +T + R S + LR + L VS VGF + +GH F
Sbjct: 91 N-CYLSRLTHTYPISRCAAASD-MELRELGATGLRVSPVGFGASPLGHVF 138
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 446 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 333
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>02_01_0091 + 646299-649082
Length = 927
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 182 PIEGRYGSEREEHRICGGVRILSAALKIQXGMYVEMSXRFVPISAAGLQGEEPLVDRIM 358
P+ R E+ E+++CGGV S AL +++ S + A Q DRI+
Sbjct: 783 PVSVRTTMEQMEYQLCGGVHAASHALLSIIPLHMMCSGSDLGTQCAEPQENSETADRIL 841
>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 178 PWXSNAQAEKKTLPXPLGGVFRPLWVTPSNTRF*RRGNDY*N-GSAAGFRNRNR 20
P + A+ +++T P G + W+TPSN R R G + G + G R+R+R
Sbjct: 1578 PRYTPAKTKQETEPMGTGFDRQETWLTPSNGRGGRGGRGRGSRGGSRGGRSRSR 1631
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,432,367
Number of Sequences: 37544
Number of extensions: 473710
Number of successful extensions: 1381
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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