Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0127
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-11|AAP40530.1| 362|Caenorhabditis elegans Hypothetical p... 34 0.091
U41543-10|AAP40531.1| 374|Caenorhabditis elegans Hypothetical p... 34 0.091
U41543-9|AAB37021.2| 453|Caenorhabditis elegans Hypothetical pr... 34 0.091
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 30 1.9
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 30 1.9
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 30 1.9
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 30 1.9
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 30 1.9
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 30 1.9
>U41543-11|AAP40530.1| 362|Caenorhabditis elegans Hypothetical
protein F46H5.2b protein.
Length = 362
Score = 34.3 bits (75), Expect = 0.091
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -3
Query: 509 SNSLKRT*RTNIDQTRH-RXHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 333
S S ++ R NI + R P TRHA L+ + PICR P+ + L
Sbjct: 181 SPSTQQMVRPNISYSPSPRESPAQSPTRHAHKLK---FQRAESPICRQPIKRKL-TVTTL 236
Query: 332 HLGDLLRIWVRTGATSPRTSXPEFSRPQRV 243
D+ R++V TSP + F PQ V
Sbjct: 237 AETDIKRLFVPRSNTSPLVTDKTFPYPQNV 266
>U41543-10|AAP40531.1| 374|Caenorhabditis elegans Hypothetical
protein F46H5.2c protein.
Length = 374
Score = 34.3 bits (75), Expect = 0.091
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -3
Query: 509 SNSLKRT*RTNIDQTRH-RXHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 333
S S ++ R NI + R P TRHA L+ + PICR P+ + L
Sbjct: 272 SPSTQQMVRPNISYSPSPRESPAQSPTRHAHKLK---FQRAESPICRQPIKRKL-TVTTL 327
Query: 332 HLGDLLRIWVRTGATSPRTSXPEFSRPQRV 243
D+ R++V TSP + F PQ V
Sbjct: 328 AETDIKRLFVPRSNTSPLVTDKTFPYPQNV 357
>U41543-9|AAB37021.2| 453|Caenorhabditis elegans Hypothetical
protein F46H5.2a protein.
Length = 453
Score = 34.3 bits (75), Expect = 0.091
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -3
Query: 509 SNSLKRT*RTNIDQTRH-RXHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 333
S S ++ R NI + R P TRHA L+ + PICR P+ + L
Sbjct: 272 SPSTQQMVRPNISYSPSPRESPAQSPTRHAHKLK---FQRAESPICRQPIKRKL-TVTTL 327
Query: 332 HLGDLLRIWVRTGATSPRTSXPEFSRPQRV 243
D+ R++V TSP + F PQ V
Sbjct: 328 AETDIKRLFVPRSNTSPLVTDKTFPYPQNV 357
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 391 TSE*GLALRTGACRVWTGSGCXRCRVWSMFVRYVRFSELDFNIMRPQKLYIFNMTLAKIV 570
T + G +R A +VW G + R +F + F+E D + P + ++ L K
Sbjct: 343 TGKLGRIIRHDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYN 402
Query: 571 LR-FRTGSGPVVLRP 612
+R T +VL+P
Sbjct: 403 IRQHTTDEDTIVLQP 417
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 391 TSE*GLALRTGACRVWTGSGCXRCRVWSMFVRYVRFSELDFNIMRPQKLYIFNMTLAKIV 570
T + G +R A +VW G + R +F + F+E D + P + ++ L K
Sbjct: 343 TGKLGRIIRHDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYN 402
Query: 571 LR-FRTGSGPVVLRP 612
+R T +VL+P
Sbjct: 403 IRQHTTDEDTIVLQP 417
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 391 TSE*GLALRTGACRVWTGSGCXRCRVWSMFVRYVRFSELDFNIMRPQKLYIFNMTLAKIV 570
T + G +R A +VW G + R +F + F+E D + P + ++ L K
Sbjct: 343 TGKLGRIIRHDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYN 402
Query: 571 LR-FRTGSGPVVLRP 612
+R T +VL+P
Sbjct: 403 IRQHTTDEDTIVLQP 417
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 391 TSE*GLALRTGACRVWTGSGCXRCRVWSMFVRYVRFSELDFNIMRPQKLYIFNMTLAKIV 570
T + G +R A +VW G + R +F + F+E D + P + ++ L K
Sbjct: 343 TGKLGRIIRHDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYN 402
Query: 571 LR-FRTGSGPVVLRP 612
+R T +VL+P
Sbjct: 403 IRQHTTDEDTIVLQP 417
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 391 TSE*GLALRTGACRVWTGSGCXRCRVWSMFVRYVRFSELDFNIMRPQKLYIFNMTLAKIV 570
T + G +R A +VW G + R +F + F+E D + P + ++ L K
Sbjct: 343 TGKLGRIIRHDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYN 402
Query: 571 LR-FRTGSGPVVLRP 612
+R T +VL+P
Sbjct: 403 IRQHTTDEDTIVLQP 417
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 391 TSE*GLALRTGACRVWTGSGCXRCRVWSMFVRYVRFSELDFNIMRPQKLYIFNMTLAKIV 570
T + G +R A +VW G + R +F + F+E D + P + ++ L K
Sbjct: 343 TGKLGRIIRHDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYN 402
Query: 571 LR-FRTGSGPVVLRP 612
+R T +VL+P
Sbjct: 403 IRQHTTDEDTIVLQP 417
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,147,220
Number of Sequences: 27780
Number of extensions: 360632
Number of successful extensions: 1026
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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