Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0127
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.0  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 159 RQKRKLFPYLSAASSGHFGLPRRTLVFKDEGTIIETVPLPGS 34
           R    ++PY+SAA++ H    ++ +     G     VP  GS
Sbjct: 83  RTTSSMYPYVSAAAAHHHHQQQQAVAAAAFGATSSMVPGFGS 124


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 535 LYIFNMTLAKIVLRFRTGSGPVVLRP 612
           +YI + +  K  LR R G+G V + P
Sbjct: 132 IYIESFSYHKQKLRLRWGTGAVTVNP 157


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 644 TRLTARXDPAEGRRTTGPDPVRKRKTI 564
           T  T     AE R+   P P+R  KTI
Sbjct: 436 THTTTNGCTAELRKKEPPHPIRVAKTI 462


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 644 TRLTARXDPAEGRRTTGPDPVRKRKTI 564
           T  T     AE R+   P P+R  KTI
Sbjct: 422 THTTTNGCTAELRKKEPPHPIRVAKTI 448


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 644 TRLTARXDPAEGRRTTGPDPVRKRKTI 564
           T  T     AE R+   P P+R  KTI
Sbjct: 456 THTTTNGCTAELRKKEPPHPIRVAKTI 482


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 644 TRLTARXDPAEGRRTTGPDPVRKRKTI 564
           T  T     AE R+   P P+R  KTI
Sbjct: 405 THTTTNGCTAELRKKEPPHPIRVAKTI 431


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/47 (21%), Positives = 21/47 (44%)
 Frame = -1

Query: 256 GRREYPDTAANAVLFAFRTISPFYRIPWXSNAQAEKKTLPXPLGGVF 116
           G+ +  D  ++ ++ A   I  FY  P  +  +  K+  P P   ++
Sbjct: 192 GQPKLTDFGSSVLIGAPNEIDKFYGTPGYTAPEVIKQNRPTPAADIY 238


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 642 TTYG*XRSRGRPENDGSGSSPKT*DDFRE 556
           TT    R R R +NDG G+  +  D+  E
Sbjct: 259 TTIPTRRLRKRRQNDGEGADDRDDDEENE 287


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 549 YDTRENRLTFSDWIRT 596
           YDT   R+ F  W+ +
Sbjct: 178 YDTHRCRINFGSWVHS 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,722
Number of Sequences: 438
Number of extensions: 4615
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)