Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0127
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote...    31   0.59 
At1g76965.1 68414.m08961 glycine-rich protein                          30   1.4  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    29   4.2  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    29   4.2  
At5g42370.1 68418.m05159 expressed protein                             28   5.5  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   5.5  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   7.3  
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta...    27   9.6  
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta...    27   9.6  

>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 773

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 2   EFGTRNPVPIPEPGS-GTVS-IIVPSSLKTSVRRGNPKW 112
           EFGT  P P P P S G +S    P SL+    + NPKW
Sbjct: 634 EFGTIGPTPSPSPSSVGPISPYCAPESLRN--LKPNPKW 670


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 466 PGTGXIRFPSKPDTPRSSEPILIPKLRIQFAD 371
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 475 STRPGTGXIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 356
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 475 STRPGTGXIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 356
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 193 PFYRIPWXSNAQAEKKTLPXPLGGVFRPL-WVTPSNTR 83
           P Y +      Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 249 ESIRTPPQMRCSSRSEPYLPSIGFHGXRTLRQK 151
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 668 PIAHETKPTRLTARXDPAEGRRTTGPDPVRKRK 570
           PI    +PT    R  PA  RR   P P  +R+
Sbjct: 288 PIRRHRRPTHEGRRQSPAPSRRRRSPSPPARRR 320


>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 506 NSLKRT*RTNIDQTRHRXHPLPVQTRHAPVLRANPYSEVTDP 381
           N  K T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 506 NSLKRT*RTNIDQTRHRXHPLPVQTRHAPVLRANPYSEVTDP 381
           N  K T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,487,652
Number of Sequences: 28952
Number of extensions: 348807
Number of successful extensions: 917
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)