Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0126
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   2.7  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    26   4.8  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   4.8  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 290 KEIPNELRATQEYNLNETNGLQE 358
           KE+ NEL  T+E  L  TN LQE
Sbjct: 856 KEVANELTITKERVLQLTNDLQE 878


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 198 ILPDTYWFELIWCSSDVMKMMLQAIVLQLI 287
           I+   YWF    CS D  K  L  ++ QLI
Sbjct: 226 IVESIYWFSSALCSEDPPKSALLNLLKQLI 255


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 284 DNKEIPNELRATQEYNLNETNGLQETVEEGE 376
           DNK  P E  A     L   NG +E  E+GE
Sbjct: 891 DNKSTPEEREAFLRSLLENENGEEENDEKGE 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,612
Number of Sequences: 5004
Number of extensions: 38968
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)