Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0126
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0053 + 397406-397609,398483-398561,398648-398742,399289-39...    31   0.92 
11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215     29   3.7  
03_01_0507 + 3827500-3827622,3827912-3828064                           29   3.7  
07_03_0509 - 18903315-18903443,18903547-18903904,18904012-189040...    28   6.5  
07_03_0656 - 20339200-20339368,20339847-20339998,20340106-203402...    27   8.5  
01_05_0752 - 24909954-24910502,24914620-24914786,24914916-249149...    27   8.5  
01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560...    27   8.5  

>02_01_0053 +
           397406-397609,398483-398561,398648-398742,399289-399393,
           399496-399575,399832-399922,400021-400128,400529-400615,
           400862-400972
          Length = 319

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 312 LNSLGISLLSAGVLLLVTSFSSHLMSTILIQTNMYQVVYQIYHHYIAIV 166
           L +L + +  A +L L TSF+  L   +LI        + IYHHY+A++
Sbjct: 152 LPALAVQMYQAWLLFLYTSFA--LRENVLIVNGSDIRPWWIYHHYLAML 198


>11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215
          Length = 1073

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = -2

Query: 390 NVCGASPSSTVSCKPFVSFKLYSCVALNS------LGISLLSAGVLLLVTSFSSHLMSTI 229
           N  GA PSS   CK  V   L SC   N       L IS LS G+ L    FS  + S I
Sbjct: 515 NFSGAIPSSIGRCKNLVMLNL-SCNTFNGIIPPELLSISSLSKGLDLSYNGFSGPIPSKI 573


>03_01_0507 + 3827500-3827622,3827912-3828064
          Length = 91

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 42  SRNHAXIEVTDTCVILKSLHQNPCFYIDKLSNSKRTLTQNNAQ 170
           SR+ A   + +TC  +KSLH+      D+LS    T+  N+ Q
Sbjct: 40  SRSSASKLLKETCSYIKSLHREVDDLSDRLSELMSTMDNNSPQ 82


>07_03_0509 -
           18903315-18903443,18903547-18903904,18904012-18904068,
           18904151-18904237,18904337-18904875
          Length = 389

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 375 SPSSTVSCKPFVSFKLYSCVALNSLGISLLSAGVLLLVTSFSSHLM 238
           +P    S  PF+     + + +N+LG+ L  AG  + +T ++S LM
Sbjct: 94  APLVACSLAPFLLHVALAHLLVNALGLGLAGAGAAVSITFWASCLM 139


>07_03_0656 -
           20339200-20339368,20339847-20339998,20340106-20340261,
           20340658-20340916,20341134-20341250,20341777-20341839,
           20341935-20342113
          Length = 364

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 312 LNSLGISLLSAGVLLLVTSFSSHLMSTILIQTNMYQVVYQIYHHYIA 172
           ++S G    +A VL+ +     H+MS I +   M  +V+  Y H  A
Sbjct: 1   MSSGGAKAYAAVVLIRIMYSGMHVMSKIALDQGMNPLVFLFYRHTTA 47


>01_05_0752 -
           24909954-24910502,24914620-24914786,24914916-24914979,
           24915472-24915597,24915673-24915943,24916032-24916287,
           24916386-24916754,24916850-24916891,24917474-24917682,
           24918074-24918109,24918509-24918918,24919314-24919438,
           24920267-24920333,24921596-24921652
          Length = 915

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 242 RCDENDVTSNSTPADNKEIPNELRATQEYNLNETNGLQETVEEGEAP 382
           RCD  D   N +P+     P E R+  EYN+++   L + V++   P
Sbjct: 315 RCDLLDAGVNRSPSAYLNNPAEERSKYEYNVDKEMTLIKFVDDELGP 361


>01_05_0343 + 21155237-21155496,21155596-21155842,21155939-21156064,
            21156291-21156428,21156513-21156650,21156756-21157013,
            21157404-21157541,21158023-21158092,21158267-21158480,
            21158614-21158719,21159844-21160077,21160836-21161000,
            21161083-21161232,21161308-21161399,21161631-21161712,
            21161800-21161883,21161980-21162096,21162179-21162289,
            21162698-21162892,21164495-21164575,21165671-21165720,
            21165978-21165990,21166518-21166600,21166693-21166833,
            21166879-21166936,21167023-21167072,21167474-21167582,
            21167666-21167727,21168321-21168363
          Length = 1204

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 231  ILIQTNMYQVVYQIYHHYIAIVHYSVLMSVCCLIICQYRNMDFGVKTL 88
            + I ++  +V  QI  H + ++H  +L   CC+ +C     D  +K++
Sbjct: 1016 VFIPSHYKKVHVQI--HLVLLIHLFLLSIACCVDLCMRFTSDVKIKSI 1061


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,732,171
Number of Sequences: 37544
Number of extensions: 213870
Number of successful extensions: 597
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)