Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0126
(595 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) 49 2e-06
SB_44058| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_14830| Best HMM Match : NADH5_C (HMM E-Value=1.1) 29 2.1
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 28 6.5
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 28 6.5
SB_36919| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_12880| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_36029| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_20684| Best HMM Match : zf-C2H2 (HMM E-Value=5.8) 27 8.6
>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
Length = 475
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = +3
Query: 30 DMRVSRNHAXIEVTDTCVILKSLHQNPCFYIDKLSNSKR--TLTQNNAQLLCNGDKFGIL 203
D RVSR+HA +++ + + L + H NP F+ KLS ++ L ++ +Q L GD +L
Sbjct: 89 DKRVSRSHATLDINNGKLTLSATHTNPTFF--KLSGREKFSALRKDESQELKTGDLISLL 146
Query: 204 PDTYWFELI 230
PD + FE+I
Sbjct: 147 PDQHVFEII 155
>SB_44058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +3
Query: 105 NPCFYIDKLSNSKRTLTQNNAQLLCNGDKFGILPDTYWFELIWCSSDVM 251
N C LS++ R++T + L C+ G + D W+ + + ++M
Sbjct: 5 NECTQYRNLSSADRSMTYVSGSLKCDSKSSGAIVDGLWYRFVGAAGNMM 53
>SB_14830| Best HMM Match : NADH5_C (HMM E-Value=1.1)
Length = 175
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 362 LSLVSHLFHLNYILVLLSTRWVFLYYQLEYYCL*HHFHH 246
LS +S LF + I+ + + +YY +Y HH HH
Sbjct: 70 LSPMSLLFIIIIIITITVITAIIIYYHFHHYHYNHHHHH 108
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 256 IFITSDEHHINSNQYVSGSIPNLSPLH-SNCALFCVNVRL 140
I T ++ IN +QY + IPNL PL S+ A+ V + L
Sbjct: 1741 ILHTLHQYSINYSQYSANFIPNLPPLSPSSVAMLAVEICL 1780
>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 300
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/73 (17%), Positives = 34/73 (46%)
Frame = -2
Query: 327 YSCVALNSLGISLLSAGVLLLVTSFSSHLMSTILIQTNMYQVVYQIYHHYIAIVHYSVLM 148
Y ++L + LL V++ ++ + L+ ++ + V + + + ++ V
Sbjct: 126 YVVLSLGCYVVMLLCHHVVMSLSCYIDMLLCRCVVMSICCYDVMLLCRYNVTSKYFCVDF 185
Query: 147 SVCCLIICQYRNM 109
+CC ++C+Y M
Sbjct: 186 LICCYVVCRYAVM 198
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -2
Query: 369 SSTVSCKPFVSFKLYSCVALNSLGISLLSAGVLLLVTSFSSHL 241
S +C P +++ L++C+++ +G+ L+A V +L S + L
Sbjct: 2328 SERTACGPVLAYSLWACLSVQLVGLFELTACVPILAYSLCACL 2370
>SB_36919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 248 DENDVTSNSTPADNKEIPNELRATQEYNLN 337
+E V S P ++PN L+ ++Y+LN
Sbjct: 71 NETPVNSTVNPKSTTQLPNNLKLIEKYHLN 100
>SB_12880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -1
Query: 262 NIIFITSDEHHINSNQYVSGSIPNLS--PLHSNCALFCVNVRLLFDNLSI*KHGFWCKDF 89
+I+++ HH Y S+P + PL S C F +V+ L D+ K KDF
Sbjct: 94 DILYLDESGHHPTLYSY-QNSLPRMPVPPLKSTCQRFLSSVKPLLDSEEYNKMEELSKDF 152
Query: 88 K 86
+
Sbjct: 153 E 153
>SB_36029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 260 VTSNSTPADNKEIPNELRATQEYNLNETNGLQETVEEG 373
+T+ STP N + + TQEY TN + ++G
Sbjct: 10 LTTTSTPEVNSHAKSHVTETQEYRKIRTNSARHYAQKG 47
>SB_20684| Best HMM Match : zf-C2H2 (HMM E-Value=5.8)
Length = 395
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 260 VTSNSTPADNKEIPNELRATQEYNLNETNGLQETVEEG 373
+T+ STP N + + TQEY TN + ++G
Sbjct: 357 LTTTSTPEVNSHAKSHVTETQEYRKIRTNSARHYAQKG 394
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,280
Number of Sequences: 59808
Number of extensions: 263904
Number of successful extensions: 789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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