Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0126
(595 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55660.1 68414.m06371 F-box family protein contains F-box dom... 29 2.3
At5g07110.1 68418.m00810 prenylated rab acceptor (PRA1) family p... 28 4.1
At4g22010.1 68417.m03185 multi-copper oxidase type I family prot... 28 4.1
At5g15170.1 68418.m01777 tyrosyl-DNA phosphodiesterase-related s... 28 5.4
At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5) M... 27 7.1
At4g01190.1 68417.m00157 phosphatidylinositol-4-phosphate 5-kina... 27 7.1
At3g14650.1 68416.m01854 cytochrome P450, putative similar to GB... 27 7.1
At1g17750.1 68414.m02197 leucine-rich repeat transmembrane prote... 27 7.1
At3g58920.1 68416.m06566 F-box family protein contains F-box dom... 27 9.4
At2g19670.1 68415.m02299 protein arginine N-methyltransferase, p... 27 9.4
At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family pr... 27 9.4
At1g09750.1 68414.m01094 chloroplast nucleoid DNA-binding protei... 27 9.4
>At1g55660.1 68414.m06371 F-box family protein contains F-box domain
Pfam:PF00646
Length = 492
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 96 LHQNPCFYIDKLSNSKRTLTQNNAQLLCN-GDKFGILPD 209
L Q P F DK++ S T T+ N +++ N DK LPD
Sbjct: 22 LGQIPSFLFDKINESWLTSTKRNVEIVKNLMDKISQLPD 60
>At5g07110.1 68418.m00810 prenylated rab acceptor (PRA1) family
protein weak similarity to prenylated Rab acceptor 1
(PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
PF03208: Prenylated rab acceptor (PRA1)
Length = 216
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 312 LNSLGISLLSAGVLLLVTSFSSHLMSTILI 223
L +LGI LS V++ +TS S LMST+ +
Sbjct: 132 LETLGILCLSTVVVMFMTSVGSLLMSTLAV 161
>At4g22010.1 68417.m03185 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 541
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 298 YFFIISWSTIACNIIFITSDEHHINSNQYVSGSIPN 191
Y+ +IS S ++ TS H+ NS + VSG +PN
Sbjct: 271 YYIVIS-SRFTRKVLTTTSILHYSNSRKGVSGPVPN 305
>At5g15170.1 68418.m01777 tyrosyl-DNA phosphodiesterase-related
similar to Chain A, Crystal Structure Of Human
Tyrosyl-Dna Phosphodiesterase (Tdp1) [Homo sapiens]
GI:20150581
Length = 605
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +3
Query: 30 DMRVSRNHAXIEV-TDTCVILKSLHQNPCFYIDKLSNSKRTLTQNNAQLLCNGDKFGILP 206
D R+SR H I V T L NP ++ + + +CN D ++P
Sbjct: 43 DKRLSRKHITIIVSTSGSASLSVDGTNPVVIRSSGDGERKKVKPSEEVSVCNDDLIELIP 102
Query: 207 DTYWFELIWCSSDVMKMMLQA 269
++F+L+ + K +A
Sbjct: 103 GHHFFKLVLLNGRAAKKARKA 123
>At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5)
Monovalent cation:proton antiporter family 2 (CPA2
family) member, PMID:11500563; related to
glutathione-regulated potassium-efflux system protein
[Escherichia coli] GP|606284|gb|AAA58147
Length = 568
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -2
Query: 342 VSFKLYSCVALNSLGISL----LSAGVLLLVTSFSSHLMSTILIQTNMYQVVYQIYHHYI 175
V+F L S + LG+SL AGV+L T F+ H + + N++ ++ +
Sbjct: 376 VAFCLLSAWCSDKLGLSLELGSFVAGVMLSTTEFAQHTLEQVEPIRNLFAALFLSSIGML 435
Query: 174 AIVHY 160
VH+
Sbjct: 436 INVHF 440
>At4g01190.1 68417.m00157 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam profile
PF01504: Phosphatidylinositol-4-phosphate 5-Kinase
Length = 401
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 15 VNDAEDMRVS---RNHAXIEVTDTCVILKSLHQNPCFYIDKLSNSK 143
VN D++ S R++ IEV +T V LK + + CFY+D L+ +
Sbjct: 147 VNKLYDLKGSPKGRSNKKIEVRNTTV-LKDIDFDFCFYVDPLARQR 191
>At3g14650.1 68416.m01854 cytochrome P450, putative similar to
GB:Q05047 from [Catharanthus roseus]
Length = 512
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 105 NPCFYIDKLSNSKRTLTQNNAQLLCNGDK 191
NP F+++K+ N Q+ ++++C DK
Sbjct: 156 NPAFHLEKIKNMVPAFHQSCSEIVCKWDK 184
>At1g17750.1 68414.m02197 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor-like protein kinase
INRPK1 GI:1684913 from [Ipomoea nil]
Length = 1088
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 363 TVSCKPFVSFKLYSCVALNSLGISLLS 283
T+ C FV F++ S +LNS G++LLS
Sbjct: 10 TLLCSLFVYFRIDSVSSLNSDGLALLS 36
>At3g58920.1 68416.m06566 F-box family protein contains F-box domain
Pfam:PF00646
Length = 470
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 372 PSSTVSCKPFVSFKLYSCVALNSLGISLLSAGVLL 268
PS +CK V KL SC+ S I ++ L
Sbjct: 126 PSEVFTCKTIVDLKLTSCIFAESYVIDVIPENAFL 160
>At2g19670.1 68415.m02299 protein arginine N-methyltransferase,
putative similar to protein arginine N-methyltransferase
1-variant 1 [Homo sapiens] GI:7453577
Length = 366
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 233 VLIRCDENDVTSNSTPADNKEIPNELRATQEYNLN 337
VL C+ +T + T A NK+ P ++ Y+LN
Sbjct: 317 VLTICEGETITGSMTIAQNKKNPRDVDIKLSYSLN 351
>At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family
protein / glycosyltransferase sugar-binding DXD
motif-containing protein low similarity to
alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
[gi:5726306], Gb3 synthase, Rattus norvegicus
[gi:9082162] ; contains Pfam profiles PF04572: Alpha
1,4-glycosyltransferase conserved region, PF04488:
Glycosyltransferase sugar-binding region containing DXD
motif
Length = 435
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 321 CVALNSLGISLLSAGVLLLVTSFSSHLMSTILIQTNMYQVVYQIYHH 181
C+ ++ LG+ L+ + + FS HL+ IQ+ + QI HH
Sbjct: 26 CLPMSLLGLLLMLLLIYNSFSVFSLHLVPNQPIQSTLSPTHLQILHH 72
>At1g09750.1 68414.m01094 chloroplast nucleoid DNA-binding
protein-related contains Pfam profile PF00026:
Eukaryotic aspartyl protease;b similar to CND41,
chloroplast nucleoid DNA binding protein (GI:2541876)
[Nicotiana tabacum]
Length = 449
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 426 GLSDCFSSDCSFNVCGASPSSTVSC 352
G S C ++ SFN +S STVSC
Sbjct: 134 GCSGCSNASTSFNTNSSSTYSTVSC 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,680,408
Number of Sequences: 28952
Number of extensions: 189764
Number of successful extensions: 566
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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