Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0123
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 31 0.25
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 28 1.8
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 27 2.3
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 27 3.1
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.1
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 26 5.4
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 5.4
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 5.4
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch... 26 7.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 7.1
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 26 7.1
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.4
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 30.7 bits (66), Expect = 0.25
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
Frame = +3
Query: 372 RWLHEAYGLGRFGYAQP-----ERFHYSISGRQER 461
R++HEA+G+ FG + P E+FH++ SG +R
Sbjct: 629 RYVHEAFGMHTFGDSGPAPKLYEKFHFTTSGVAQR 663
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 619 LVEFSVQAATTPSLISWAEQHVLGMGRP*SAQSAGLFYRSIASL 488
LVE + AA W Q+ L MG P S + +F R ++SL
Sbjct: 253 LVEKILDAAGQKGTGKWTAQNALEMGTPVSLITEAVFARCLSSL 296
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 534 DRPSRPDCFTAALQVCLYDINSLLDVLVYRILSNGSVQVAH 412
+RP+ P+ + +C D NS+ VY LS+GS+ H
Sbjct: 541 ERPTYPEYLKIPILIC-GDFNSVQGSGVYDFLSSGSISQNH 580
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 382 MKHTDLEDSVMRNLNASITQYPVDKN 459
+K +EDS + N+ AS+ + VDKN
Sbjct: 416 VKVETVEDSFLSNIGASLLSFTVDKN 441
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 394 DLEDSVMRNLNASITQYPVDKNVQK-TIDIIQTDLQCCGKTVRPTGPIT 537
D+E++V+ T P+ N Q+ T D+ ++D CG T + P+T
Sbjct: 250 DVENAVVGTSPLEYTSKPLAANRQRSTADLTESD-NICGLTAGKSDPVT 297
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 702 PIPTPASTIPNVLHVNNQF 646
P+PTP S +P+ L NN F
Sbjct: 211 PLPTPTSQLPSNLSSNNLF 229
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -1
Query: 435 NGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEE 331
+GS+ + H++ FQ H T + + EY E
Sbjct: 1111 SGSISLKHSKSFQSASTHSTKSSSVEIVREYSSRE 1145
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 618 NFHSKGMSY*TGCSHEGHWVWCSPALESV-IAFGVSSSV--*KFRNAGLG 758
++H KG+ GC+ W+W P+ + V + +G ++ V KF G+G
Sbjct: 153 SWHPKGLFLAAGCNDGSIWMWSLPSGKVVQVMYGHTAPVNAGKFIPPGVG 202
>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -3
Query: 238 ENDRSELVEVLIGEVHVRIRVYFSPDAN 155
E+ E++E GE + +R++F+P+A+
Sbjct: 76 ESPPFEVIETGWGEFDIMVRIFFAPEAH 103
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 7.1
Identities = 19/93 (20%), Positives = 41/93 (44%)
Frame = +1
Query: 265 VAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY 444
++FFG + N CMI +++ ++F + ++ D+ V N++ ++Y
Sbjct: 1017 LSFFGNVTEINTNKCMINSWTSLRPVLFGPSEQLP-RNFLLRNDI---VPNTNNSAWSEY 1072
Query: 445 PVDKNVQKTIDIIQTDLQCCGKTVRPTGPITVC 543
+ + I ++Q + C T+ PT C
Sbjct: 1073 IRNLYPKAYIYLLQYTIAVCKPTIAPTNVACCC 1105
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 77 GGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLIIVGIM 256
GG+ +L F + ++FA T ++LI+ +R + P D + K + +GI+
Sbjct: 351 GGIGSSDFLNFLYGIIFAGTAGMMLILSLRVIL---PEALRHDHSENKRHSFICFTIGIL 407
Query: 257 F 259
F
Sbjct: 408 F 408
>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = +1
Query: 232 RSHHCRHYVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDS 408
+S H + F G K HC+I+ F L + + V +A + DL+ S
Sbjct: 22 KSAHVACGALVAVFLGLYIGTKSIHCLILFFLAICLWLSLTWFLVELAHARVNNDLQMS 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,295
Number of Sequences: 5004
Number of extensions: 71196
Number of successful extensions: 222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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