Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0123
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0708 - 5298456-5298664,5299615-5299768,5300209-5300301,530...    29   3.2  
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769...    29   4.2  
12_02_0386 + 18429675-18430679,18431001-18431111,18431139-184311...    29   5.6  
04_03_1044 - 21965237-21965341,21966130-21966300,21966414-219665...    28   7.4  
04_03_0743 + 19231835-19232204,19232889-19233061,19233200-192332...    28   7.4  
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248...    28   9.8  

>02_01_0708 -
           5298456-5298664,5299615-5299768,5300209-5300301,
           5300644-5300847,5302034-5302174,5302723-5302827,
           5303485-5303874,5304573-5304713,5304756-5304845,
           5305779-5306288
          Length = 678

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
 Frame = -2

Query: 791 VFHNLACEMERTEASIAEFSHRGADPKSDYRFQRRRAPYPMSFM*TTSLVRHPLRVEVGR 612
           V   +  +++ T A     + R + P        R   +   F   TS+V+H   V+   
Sbjct: 317 VSQQVTSDIDVTMADANASNARNSTPTGTNPAYYRNTTFVEGFS-KTSVVKHASDVKGHS 375

Query: 611 VLGAGRDDAVIDLLGGAARAR-YG----QTVIGPVGRTVLPQHCKSVCMISIVFW 462
           V      ++VI +L     A  YG      V+G +G+ V  +HC+ V +I+   W
Sbjct: 376 VKVLNCHESVIYILAPLKYATVYGCSDATVVLGAIGKVVKVEHCERVHIIAAAKW 430


>06_02_0032 +
           10775031-10775520,10775661-10776246,10776333-10776973,
           10777270-10777973
          Length = 806

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 211 LLQVRSDRSHHCRHYVFIVAFFGCCGAVKENHCMIITFSVFLLII 345
           L+Q +    HH      I+  FG  GA     C  +T S++++ +
Sbjct: 455 LVQYKPILKHHILELAMIMDLFGLIGAYSAGSCRDVTTSIYVIAL 499


>12_02_0386 +
           18429675-18430679,18431001-18431111,18431139-18431195,
           18431552-18431589,18431688-18431733,18431811-18431849
          Length = 431

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 250 HYVFIVAFFGCCGAVKENHCMIITFSV 330
           HY  +V  +G  G ++E HC + T  V
Sbjct: 242 HYACVVDLYGRAGLIEEAHCFVKTMPV 268


>04_03_1044 -
           21965237-21965341,21966130-21966300,21966414-21966564,
           21968768-21969348
          Length = 335

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 361 AVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCGKTV 516
           AV +AG +  T L   V R  + +++ Y V+  V+ +ID+    +   G+ +
Sbjct: 174 AVLLAGMVNVTTLSSKVYRQRDGTVSLYGVNSLVEASIDVSNCQMSPSGEAM 225


>04_03_0743 +
           19231835-19232204,19232889-19233061,19233200-19233297,
           19233970-19234107,19234266-19234455,19234875-19235007,
           19235095-19236029
          Length = 678

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 539 TVIGPVGRTVLPQHCKSVCMISIV 468
           +++G  G + LPQHC ++C +  V
Sbjct: 553 SILGVEGFSALPQHCLAICSVFFV 576


>06_03_1104 +
           27623632-27623795,27624052-27624175,27624316-27624832,
           27624943-27625073,27625161-27625567,27625690-27625963,
           27626195-27626814,27627424-27627859
          Length = 890

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -1

Query: 480 DINSLLDVLVYRILSNGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEEY*KRYYH 310
           D N L D+ +  +LSNG    AH  I  VR   +   A S  S     +E+ + +YH
Sbjct: 614 DDNELADLEL--LLSNGESLKAHTAIISVRCPKLLPSAKSLGSDGKITDEWGRSFYH 668


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,627,903
Number of Sequences: 37544
Number of extensions: 498791
Number of successful extensions: 1401
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)